Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14n04
         (517 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-11|CAB16517.1|  154|Caenorhabditis elegans Hypothetical p...   198   1e-51
Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical pr...    27   8.0  
L23645-3|AAK26139.1|  211|Caenorhabditis elegans Zinc finger pro...    27   8.0  

>Z99281-11|CAB16517.1|  154|Caenorhabditis elegans Hypothetical
           protein Y57G11C.16 protein.
          Length = 154

 Score =  198 bits (484), Expect = 1e-51
 Identities = 89/128 (69%), Positives = 110/128 (85%)
 Frame = -2

Query: 438 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 259
           MSL+IP+KFQHI R+MNTNIDG RKV +A+TAIKGVGRR++ +  +KAD+D++KRAGE T
Sbjct: 1   MSLIIPEKFQHIHRVMNTNIDGNRKVPYALTAIKGVGRRFAFVCCRKADVDVNKRAGELT 60

Query: 258 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 79
           EE+ +KI+TIM NP QYKIP+WFLNRQKDI DGK  QL S+ +D+KLREDLER+KKIR H
Sbjct: 61  EEDFDKIVTIMQNPSQYKIPNWFLNRQKDIKDGKTGQLLSTAVDNKLREDLERMKKIRLH 120

Query: 78  RGMRHXLG 55
           RG+RH  G
Sbjct: 121 RGLRHYWG 128



 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 20/31 (64%), Positives = 23/31 (74%)
 Frame = -3

Query: 95  RRFALTEGCDIXWGLRVRGQHTKTTGRRGRT 3
           ++  L  G    WGLRVRGQHTKTTGR+GRT
Sbjct: 115 KKIRLHRGLRHYWGLRVRGQHTKTTGRKGRT 145


>Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK829.4 protein.
          Length = 536

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -2

Query: 222 NPRQYKIPDWFLNRQKDIVDGKYS-QLTSSNLDSKLREDL 106
           NP  YK+ D++ N+  +++  K + +L S++L  K +++L
Sbjct: 40  NPSFYKMVDFYFNKGAEVIAPKLAEELKSNSLSQKDKKNL 79


>U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical protein
            C13F10.4 protein.
          Length = 2076

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 355  CDDGYQRCWPEVLQHCS 305
            C + YQ CWP +L  CS
Sbjct: 1512 CREYYQICWPPILLACS 1528


>L23645-3|AAK26139.1|  211|Caenorhabditis elegans Zinc finger
           protein protein 1,isoform b protein.
          Length = 211

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -2

Query: 501 SVFLF-VSPVLCLGTLVRNLTKMSLVIPDKFQHILRIMNTNIDGKRK 364
           S+FL  +S  L LGTL+   T     I ++  H   ++   + GKRK
Sbjct: 7   SMFLIDISLFLLLGTLIVACTVKKEKIKERHNHNRTLLKRTVGGKRK 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,198,072
Number of Sequences: 27780
Number of extensions: 258245
Number of successful extensions: 815
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)