Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14n02
         (212 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    26   0.78 
SPAC1B3.12c |rpb10||DNA-directed RNA polymerase I, II, and III s...    25   1.0  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    25   1.4  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   1.4  
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    24   2.4  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    24   3.1  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    24   3.1  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    24   3.1  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    24   3.1  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    23   4.2  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    23   5.5  
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    23   7.3  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    22   9.6  

>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 0.78
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 178 YIKICPFWTLWSGLQTERLNAK 113
           Y     FW LW+G+ T R  AK
Sbjct: 546 YESATAFWALWAGVATPRQAAK 567


>SPAC1B3.12c |rpb10||DNA-directed RNA polymerase I, II, and III
           subunit Rpb10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 71

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 2   ILTR*NVVRQQLCYNLLSKISNV 70
           ILT  +++ + LCYN LSK  N+
Sbjct: 49  ILTHVDLIEKLLCYNPLSKQKNL 71


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 158 LDAVEWIANRAFECKDKFIINKLTNADAL 72
           L ++ W+ NR F+ ++K    K  N+D L
Sbjct: 569 LASLGWVENRIFQMEEKLDTIKKKNSDVL 597


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 125 FECKDKFIINKLTNADALQHLKFLKVNYN 39
           F C +K + N   N+D+ + +KF+  + N
Sbjct: 415 FHCVNKIVANTTENSDSAEAVKFILDSQN 443


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 125 FECKDKFIINKLTNADA 75
           F+C+DKF+I  +   DA
Sbjct: 77  FKCRDKFLIQSMAIGDA 93


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 178 YIKICPFWTLWSGLQT 131
           +I IC FW  WSG ++
Sbjct: 408 FIPICLFWFGWSGRES 423


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 93  FVDNKFVFAFKRSVCNPLHSVQNGHIFIYTSGAV 194
           FV+N+  + F  +  NP+ + + G   ++T+G V
Sbjct: 91  FVNNENNYQFSTAPLNPIDACRVGERKVFTTGNV 124


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 116 KDKFIINKLTNADALQHLKFLKVNYNKVVDE 24
           K+ ++I+ L     L+H  ++K N  K+VD+
Sbjct: 443 KNIYVISTLKRPVPLEHYLWVKQNMFKIVDQ 473


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 6/32 (18%)
 Frame = +3

Query: 24  FVNNFVIIYFQK------FQMLQSVRVGQFVD 101
           +V+N  I+ FQ+      F  ++ + VGQFVD
Sbjct: 463 YVDNLYILSFQQSVLNQQFLRIEDIEVGQFVD 494


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -2

Query: 172 KICPFWTL--WSGLQTERLNAKTNLLSTN 92
           K CP   +  +SG Q+ER+N +  L+ T+
Sbjct: 483 KFCPSLRVESYSGTQSERINKRYYLMDTD 511


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 126 RSVCNPLHSVQNGHI 170
           RS+ NPLH V + H+
Sbjct: 407 RSISNPLHLVDSQHL 421


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 199 NVTAPLVYIKICPFWTLWS 143
           ++ APL+  ++C F T+W+
Sbjct: 341 SLPAPLLLNRVCEFPTVWT 359


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/26 (26%), Positives = 18/26 (69%)
 Frame = -1

Query: 104  IINKLTNADALQHLKFLKVNYNKVVD 27
            +++KL + +  +HLK+L+ +Y   ++
Sbjct: 1072 LLSKLADQEKEKHLKYLQSSYKNSLE 1097


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 788,365
Number of Sequences: 5004
Number of extensions: 11538
Number of successful extensions: 41
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 50
effective length of database: 2,112,278
effective search space used: 42245560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)