Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14n02
(212 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0051 - 22371490-22371658,22372333-22372778,22373880-223740... 28 1.2
11_06_0554 - 24930437-24930552,24930878-24931079,24931164-249312... 26 3.6
08_02_1449 - 27174451-27178005 26 3.6
04_03_0505 + 16628145-16628217,16628612-16628767,16628964-166291... 26 3.6
09_02_0389 - 8456957-8459917,8461941-8462267 25 6.3
08_01_0663 + 5721902-5723176,5724162-5724233,5724405-5724560,572... 25 6.3
11_06_0559 + 24972403-24972445,24972590-24972680,24973911-249740... 25 8.3
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 25 8.3
05_01_0339 + 2673862-2675637 25 8.3
03_05_1094 - 30348366-30348467,30348571-30348753,30348833-303489... 25 8.3
>04_04_0051 -
22371490-22371658,22372333-22372778,22373880-22374054,
22374134-22374240,22374358-22374646,22374942-22375075,
22375228-22375423,22375611-22375719,22375839-22375965
Length = 583
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -2
Query: 211 LMLQNVTAPLVYIKICPFWTLWSGLQTERLNAKTNL 104
++L NV L+ +WT++S ++TER+NA L
Sbjct: 54 MVLGNVGVILLLFPAHVWWTIYSLIKTERINAGLKL 89
>11_06_0554 -
24930437-24930552,24930878-24931079,24931164-24931269,
24931357-24931599,24932398-24932484,24932695-24932825,
24933177-24933183,24933695-24933789
Length = 328
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 93 FVDNKFVFAFKRSVCNPLHSVQNGHIF 173
F + K +F K C PL + +NGH +
Sbjct: 268 FAEVKMIFRRKYYFCCPLEAPENGHCY 294
>08_02_1449 - 27174451-27178005
Length = 1184
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 9 LVETWFVNNFVIIYFQKFQMLQSVRVGQFVDNKFVF 116
LV+ W NNF+ Q+ M+ GQFV N+ V+
Sbjct: 440 LVQLWIANNFI----QEEGMMDLEERGQFVFNELVW 471
>04_03_0505 +
16628145-16628217,16628612-16628767,16628964-16629125,
16629699-16629842,16629952-16630028,16630710-16630874,
16630988-16631341
Length = 376
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 104 IINKLTNADALQHLKFLKVNYNKVVD 27
IINK+TN+D +Q K K ++VD
Sbjct: 344 IINKMTNSDGMQATKGSKAAVFRLVD 369
>09_02_0389 - 8456957-8459917,8461941-8462267
Length = 1095
Score = 25.4 bits (53), Expect = 6.3
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Frame = -1
Query: 191 RSARVYKNMSVLDAVEWIAN-------RAFECKDKFIINKLTNADALQHLKFLKVNYNKV 33
R+A VYKN S + W+ N R+ + I + + L HL+ L ++ +V
Sbjct: 528 RTAFVYKNPSGDRGLNWLINLRSLINLRSLDLTGTCIRYIPKSLEHLHHLRLLNLSLTQV 587
Query: 32 VDEPRFNESI 3
++ P ES+
Sbjct: 588 LELPESIESL 597
>08_01_0663 +
5721902-5723176,5724162-5724233,5724405-5724560,
5724655-5724844,5725173-5725255
Length = 591
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = -1
Query: 179 VYKNMSVLDAVEWIANRAFECKDKFI-INKLTNADALQHLKFLKVNYNKVV 30
++KN+S L A + + +F C+D F+ ++ ++D K + +Y+K+V
Sbjct: 288 LFKNLSSLVAATIVLDDSFLCRDDFLHEDERGSSDDEDDNKTISDHYDKMV 338
>11_06_0559 +
24972403-24972445,24972590-24972680,24973911-24974030,
24974121-24974237,24974745-24974840,24975317-24975610,
24977153-24977258,24977365-24977566,24977671-24977792
Length = 396
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 93 FVDNKFVFAFKRSVCNPLHSVQNGHIF 173
F + K +F K C PL +NGH +
Sbjct: 334 FAEVKMIFRRKYYFCCPLEPRENGHCY 360
>08_02_0864 +
21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 25.0 bits (52), Expect = 8.3
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 42 IIYFQKFQMLQSVRVGQFVDNKFVFAFKRSVCNPLHSVQNGHIFIYTS 185
++ + F+ Q G +DN F A N L SV++GH+F Y S
Sbjct: 806 VVNKKHFEERQPETSGHTLDNDFN-ALSAHRTN-LESVESGHLFAYNS 851
>05_01_0339 + 2673862-2675637
Length = 591
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 197 RDRSARVYKNMSVLDAVEW 141
R+ +ARV+ M V DAV W
Sbjct: 73 REDAARVFDEMRVRDAVSW 91
>03_05_1094 -
30348366-30348467,30348571-30348753,30348833-30348934,
30349617-30349967,30350049-30350276,30350353-30350509,
30351189-30351370,30351443-30351866,30351949-30352892,
30353509-30353773,30354558-30355120
Length = 1166
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -1
Query: 65 LKFLKVNYNKVVDEP 21
LKFLKV NK+VD P
Sbjct: 223 LKFLKVTNNKLVDLP 237
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,554,064
Number of Sequences: 37544
Number of extensions: 61417
Number of successful extensions: 192
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 14,793,348
effective HSP length: 50
effective length of database: 12,916,148
effective search space used: 258322960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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