Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14n02
         (212 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92813-3|CAB07287.1|  621|Caenorhabditis elegans Hypothetical pr...    27   1.8  
U55370-2|AAA97994.1|  561|Caenorhabditis elegans Hypothetical pr...    26   3.2  
AF047657-8|AAK18944.1|  328|Caenorhabditis elegans Hypothetical ...    26   3.2  
AC006830-7|AAK68613.2|  479|Caenorhabditis elegans Hypothetical ...    26   4.2  
AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical...    25   5.5  
AF100675-1|AAC69003.2|  370|Caenorhabditis elegans Hypothetical ...    25   5.5  
AF016444-7|AAB65924.1|  204|Caenorhabditis elegans Hypothetical ...    25   5.5  
AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical ...    25   5.5  
U41540-2|AAK39230.1|  444|Caenorhabditis elegans Suppressor/enha...    25   7.3  
U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protei...    25   7.3  
AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin SE...    25   7.3  
Z75527-4|CAA99779.2|  316|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U39674-2|AAY86211.1|   94|Caenorhabditis elegans Hypothetical pr...    25   9.7  
DQ178236-1|ABA18178.1|  316|Caenorhabditis elegans putative low ...    25   9.7  
AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical ...    25   9.7  
AF016672-4|AAD47126.1|  968|Caenorhabditis elegans Hypothetical ...    25   9.7  
AC006790-8|AAF60730.1|  294|Caenorhabditis elegans Hypothetical ...    25   9.7  
AC006680-10|AAK72297.2|  335|Caenorhabditis elegans Seven tm rec...    25   9.7  

>Z92813-3|CAB07287.1|  621|Caenorhabditis elegans Hypothetical
           protein T28A8.3 protein.
          Length = 621

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -1

Query: 125 FECKDKFIINKLTNADALQHLKFLKVNYNKVVDEPRFNESI 3
           F  K KF I  L  ++ L+    LK     ++DEP FNE I
Sbjct: 566 FTLKFKFFILALDFSELLE----LKKKVQGIIDEPEFNEKI 602


>U55370-2|AAA97994.1|  561|Caenorhabditis elegans Hypothetical
           protein K03B4.6 protein.
          Length = 561

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -1

Query: 176 YKNMSVLDAVEWIANRAFEC-KDKFIINKLTNADALQHLKFLKVNYNKVVDEPRF 15
           Y ++   ++VE       +C KD+F+I  + N       K    NYN+ + E  F
Sbjct: 308 YTSIKCQESVEKFEKSRLDCDKDQFVIGGVPNCIEWFFKKIYNANYNECLLENDF 362


>AF047657-8|AAK18944.1|  328|Caenorhabditis elegans Hypothetical
           protein F37B4.10 protein.
          Length = 328

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 179 VYKNMSVLDAVEWIANRAFECKDKF 105
           VY+N+ V++A+   A    EC +KF
Sbjct: 2   VYQNLPVINALHCYAREKVECLEKF 26


>AC006830-7|AAK68613.2|  479|Caenorhabditis elegans Hypothetical
           protein ZK105.6 protein.
          Length = 479

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -1

Query: 71  QHLKFLKVNYNKVV 30
           +H+K+LK NY+KVV
Sbjct: 292 EHIKYLKKNYDKVV 305


>AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical
           protein Y106G6H.12 protein.
          Length = 975

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 8/32 (25%), Positives = 22/32 (68%)
 Frame = -1

Query: 122 ECKDKFIINKLTNADALQHLKFLKVNYNKVVD 27
           +C++ +I  + T+ DA +H+ ++   +NK+++
Sbjct: 53  QCEESYIKLEFTSHDAHRHMGWVVNQFNKMIE 84


>AF100675-1|AAC69003.2|  370|Caenorhabditis elegans Hypothetical
           protein Y55H10A.2 protein.
          Length = 370

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 42  IIYFQKFQMLQSVRVGQFVDNKFVFAFKRSVC 137
           I Y   F ++ ++R+G F +NK       S C
Sbjct: 51  IFYGVAFMLIANLRLGLFFENKLTLTVSTSEC 82


>AF016444-7|AAB65924.1|  204|Caenorhabditis elegans Hypothetical
           protein C36C5.5 protein.
          Length = 204

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 206 VTERDRSARVYKNMSVLDAVEWIANRAFECKDKFIINK 93
           +   ++   V K  +    V +IAN   EC+DK   NK
Sbjct: 91  IAPEEKKEMVKKIKNYCSGVSYIANDFEECRDKLAENK 128


>AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical
           protein Y67D8A.1 protein.
          Length = 1020

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 157 WTLWSGLQTERLNAKTNLLSTN 92
           W L S LQT RLN   N +  N
Sbjct: 724 WHLLSSLQTRRLNGALNRMPVN 745


>U41540-2|AAK39230.1|  444|Caenorhabditis elegans
           Suppressor/enhancer of lin-12 protein12 protein.
          Length = 444

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 211 LMLQNVTAPLVYIKICPFWTLW 146
           L+  +    LV+IK  P WT+W
Sbjct: 195 LITMSALMALVFIKYLPEWTVW 216


>U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protein
           protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 211 LMLQNVTAPLVYIKICPFWTLW 146
           L+  +    LV+IK  P WT+W
Sbjct: 195 LITMSALMALVFIKYLPEWTVW 216


>AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin
           SEL-12 protein.
          Length = 444

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 211 LMLQNVTAPLVYIKICPFWTLW 146
           L+  +    LV+IK  P WT+W
Sbjct: 195 LITMSALMALVFIKYLPEWTVW 216


>Z75527-4|CAA99779.2|  316|Caenorhabditis elegans Hypothetical
           protein C15C8.4 protein.
          Length = 316

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -1

Query: 209 HVTERDRSARVYKNMSVLDAVEWIANRA 126
           HVT+R   AR+ K +S  DA+ ++A+++
Sbjct: 39  HVTDRQNLARLEKELSGYDAI-YLASKS 65


>Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical protein
            T05H10.1 protein.
          Length = 1326

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 179  VYKNMSVLDAVEWIANRAFECKDKFIINKLTNAD 78
            V   M VL+  +W+A +    KD+F+I K  + D
Sbjct: 1001 VDSRMRVLEFKKWVAEQLEMDKDQFVIVKHASDD 1034


>U39674-2|AAY86211.1|   94|Caenorhabditis elegans Hypothetical
           protein C06E2.9 protein.
          Length = 94

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 36  FVIIYFQKFQMLQSVRVGQFVDNKF-VFAFKRSVCNPLHSVQNGHI 170
           F+ +    F +L       F+D+   +  F+R V +  HS+ +GH+
Sbjct: 17  FITVLIFVFALLSKAVSQDFIDDSADMHRFRRHVEHQKHSLNDGHL 62


>DQ178236-1|ABA18178.1|  316|Caenorhabditis elegans putative low
           density lipoproteinreceptor associated protein (37.4 kD)
           protein.
          Length = 316

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -1

Query: 209 HVTERDRSARVYKNMSVLDAVEWIANRA 126
           HVT+R   AR+ K +S  DA+ ++A+++
Sbjct: 39  HVTDRQNLARLEKELSGYDAI-YLASKS 65


>AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical
           protein F56D12.6b protein.
          Length = 951

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 63  QMLQSVRVGQFVDNKFVFAFKRSVCNPLHSVQNG 164
           ++ Q V+    V++++V A  RSV    H +QNG
Sbjct: 19  EVAQFVKERLSVEDEYVKAINRSVNKVSHYIQNG 52


>AF016672-4|AAD47126.1|  968|Caenorhabditis elegans Hypothetical
           protein F56D12.6a protein.
          Length = 968

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 63  QMLQSVRVGQFVDNKFVFAFKRSVCNPLHSVQNG 164
           ++ Q V+    V++++V A  RSV    H +QNG
Sbjct: 36  EVAQFVKERLSVEDEYVKAINRSVNKVSHYIQNG 69


>AC006790-8|AAF60730.1|  294|Caenorhabditis elegans Hypothetical
           protein Y49F6B.3 protein.
          Length = 294

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -1

Query: 176 YKNMSVLDAVEWIANRAFECKDKFIINK-LTNADALQHLKFLKVNYNKVVDE 24
           Y+ M      EW+    F  +D  ++ K LT  + ++ L F K + N  +DE
Sbjct: 85  YRYMGPTWTAEWVLKH-FGIRDWMVLVKQLTGQEEIEKLCFRKNHQNYSIDE 135


>AC006680-10|AAK72297.2|  335|Caenorhabditis elegans Seven tm
           receptor protein 41 protein.
          Length = 335

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 27  VNNFVIIYFQKFQMLQSVRVGQFVDNKF-VFAFKRSVCNPL 146
           V+NF++IY   FQ+ Q V   +++   + VF    S+C+ +
Sbjct: 21  VSNFLLIYLTIFQVKQIVGTYKYMIILYSVFGIGFSICDQI 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,332,267
Number of Sequences: 27780
Number of extensions: 64187
Number of successful extensions: 206
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 12,740,198
effective HSP length: 50
effective length of database: 11,351,198
effective search space used: 227023960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)