Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14n02
         (212 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   2.2  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   2.2  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    20   3.8  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    19   5.1  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    19   6.7  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    19   6.7  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    19   6.7  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    19   6.7  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    19   6.7  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    19   6.7  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    19   6.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    19   8.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    19   8.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              19   8.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    19   8.9  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 2.2
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 175 IKICPFWTLWSGL 137
           +KI P +T+W  L
Sbjct: 306 VKISPLFTIWGSL 318


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 20.6 bits (41), Expect = 2.2
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 175 IKICPFWTLWSGL 137
           +KI P +T+W  L
Sbjct: 56  VKISPLFTIWGSL 68


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 146 PQRPKRTYFYIHERSGHVL 202
           P     TY YI + SG+ L
Sbjct: 181 PNNCDNTYAYISDLSGYAL 199


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 19.4 bits (38), Expect = 5.1
 Identities = 7/35 (20%), Positives = 19/35 (54%)
 Frame = +3

Query: 63  QMLQSVRVGQFVDNKFVFAFKRSVCNPLHSVQNGH 167
           +++  +R G+F D+  +  +   +   L + +NG+
Sbjct: 49  ELVDGMRRGEFPDDHDLQCYTTCIMKLLRTFKNGN 83


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 119 CKDKFIINKLTNADALQHLKFLKVNYN 39
           CK+  II+ L+N     +      NYN
Sbjct: 76  CKEPKIISSLSNNYKYSNYNNYNNNYN 102


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 119 CKDKFIINKLTNADALQHLKFLKVNYN 39
           CK+  II+ L+N     +      NYN
Sbjct: 76  CKEPKIISSLSNNYKYSNYNNYNNNYN 102


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 119 CKDKFIINKLTNADALQHLKFLKVNYN 39
           CK+  II+ L+N     +      NYN
Sbjct: 76  CKEPKIISSLSNNYKYSNYNNYNNNYN 102


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 119 CKDKFIINKLTNADALQHLKFLKVNYN 39
           CK+  II+ L+N     +      NYN
Sbjct: 76  CKEPKIISSLSNNYKYSNYNNYNNNYN 102


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 119 CKDKFIINKLTNADALQHLKFLKVNYN 39
           CK+  II+ L+N     +      NYN
Sbjct: 76  CKEPKIISSLSNNYKYSNYNNYNNNYN 102


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 119 CKDKFIINKLTNADALQHLKFLKVNYN 39
           CK+  II+ L+N     +      NYN
Sbjct: 76  CKEPKIISSLSNNYKYSNYNNYNNNYN 102


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 119 CKDKFIINKLTNADALQHLKFLKVNYN 39
           CK+  II+ L+N     +      NYN
Sbjct: 76  CKEPKIISSLSNNYKYSNYNNYNNNYN 102


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 18.6 bits (36), Expect = 8.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 41  YNLLSKISNVAKRPRWSI 94
           YN  SK S+   RP++ I
Sbjct: 358 YNTPSKRSDYDSRPQYQI 375


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 18.6 bits (36), Expect = 8.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 151 ASKTDIFLYTRAERSRSV 204
           A+   + L+TRAE +R +
Sbjct: 195 ANARAVVLFTRAEDARGI 212


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 18.6 bits (36), Expect = 8.9
 Identities = 4/17 (23%), Positives = 10/17 (58%)
 Frame = +3

Query: 111 VFAFKRSVCNPLHSVQN 161
           +  ++ S C P H +++
Sbjct: 514 ILVYEPSACRPRHEIRS 530


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 18.6 bits (36), Expect = 8.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 151 ASKTDIFLYTRAERSRSV 204
           A+   + L+TRAE +R +
Sbjct: 285 ANARAVVLFTRAEDARGI 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,609
Number of Sequences: 438
Number of extensions: 856
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  3165825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)