Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14n01
         (541 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-596|AAF51116.3|  149|Drosophila melanogaster CG9662-PA ...   194   5e-50
AY070777-1|AAL48399.1|   75|Drosophila melanogaster AT03617p pro...    96   3e-20
AE014134-2551|AAS64743.1|  702|Drosophila melanogaster CG33310-P...    29   4.1  

>AE014134-596|AAF51116.3|  149|Drosophila melanogaster CG9662-PA
           protein.
          Length = 149

 Score =  194 bits (474), Expect = 5e-50
 Identities = 93/148 (62%), Positives = 113/148 (76%)
 Frame = -1

Query: 475 MEGLFAIPFTVLEIPNIKIKKPTWLQAPSAMTTFSLVLLSYFLVTGGIIYDVIVEPPSVG 296
           +E L+ +PF +L  PNIK+++ + +  PS M  FS++L SYFLVTGGIIYDVIVEPPS+G
Sbjct: 2   IETLYNLPFHILVPPNIKVRRFS-IPMPSPMAVFSVILFSYFLVTGGIIYDVIVEPPSLG 60

Query: 295 STTDEHGHSRPVAFMPNRVNGQYIMEGLAXXXXXXXXXXXFIILDRTHNPTTPKLNRILL 116
           +T DEHGHSRPVAFMP RVNGQYIMEGLA           FII+D+TH P    LNR+LL
Sbjct: 61  ATVDEHGHSRPVAFMPYRVNGQYIMEGLASSFLFTVGGLGFIIMDQTHTPGKTNLNRLLL 120

Query: 115 ISVAFLCILVSFFTTWIFMRMKLPGYLQ 32
            ++ F+ ILVSFFTTW+FMRMKLP YLQ
Sbjct: 121 TAMGFIFILVSFFTTWLFMRMKLPSYLQ 148


>AY070777-1|AAL48399.1|   75|Drosophila melanogaster AT03617p
           protein.
          Length = 75

 Score = 95.9 bits (228), Expect = 3e-20
 Identities = 46/74 (62%), Positives = 53/74 (71%)
 Frame = -1

Query: 253 MPNRVNGQYIMEGLAXXXXXXXXXXXFIILDRTHNPTTPKLNRILLISVAFLCILVSFFT 74
           MP RVNGQYIMEGLA           FII+D+TH P    LNR+LL ++ F+ ILVSFFT
Sbjct: 1   MPYRVNGQYIMEGLASSFLFTVGGLGFIIMDQTHTPGKTNLNRLLLTAMGFIFILVSFFT 60

Query: 73  TWIFMRMKLPGYLQ 32
           TW+FMRMKLP YLQ
Sbjct: 61  TWLFMRMKLPSYLQ 74


>AE014134-2551|AAS64743.1|  702|Drosophila melanogaster CG33310-PA
           protein.
          Length = 702

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = -2

Query: 408 HG-FKLRLP*QPFHWCYSLTFWLLEVLFMM 322
           HG +KLR   +P HW Y+L F +L +LF++
Sbjct: 419 HGKYKLR---RPSHWLYTLVFSVLYILFVI 445


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,396,950
Number of Sequences: 53049
Number of extensions: 544542
Number of successful extensions: 1358
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 2053700352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)