Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14n01
         (541 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79759-3|CAB02136.1|  225|Caenorhabditis elegans Hypothetical pr...    31   0.70 
U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF039718-3|AAB96744.1|  329|Caenorhabditis elegans Hypothetical ...    27   6.5  
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    27   8.6  

>Z79759-3|CAB02136.1|  225|Caenorhabditis elegans Hypothetical
           protein ZK858.3 protein.
          Length = 225

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -1

Query: 382 TTFSLVLLSYFLVTGGIIYDVIVEPPSVGSTTDEHGHSR 266
           +T+ L+++   ++ GG++ D   E P +  ++DE  H R
Sbjct: 3   STYILIIVPLIIIGGGVVADNTNETPVLAHSSDEQPHQR 41


>U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical protein
            R03G5.3 protein.
          Length = 1311

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
 Frame = +2

Query: 425  YVWNF--QNCKRYCK*PFHF 478
            Y+WN+  +NCK + K PF F
Sbjct: 995  YIWNYTPENCKLFLKIPFFF 1014


>AF039718-3|AAB96744.1|  329|Caenorhabditis elegans Hypothetical
           protein T12F5.2 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 107 GVPMYFSVILYHLDIHAYEVARIFTELICKLILY 6
           G   Y +V   H+++H   +A IF  LIC LILY
Sbjct: 296 GSTYYKNVSTEHINLHI--LAPIFINLICILILY 327


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
            x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 21   TN*FCKYPGNFIRMNIQVVKNDTK 92
            TN FC  P N+IR N Q +  + K
Sbjct: 1362 TNGFCHCPENYIRQNGQCISKECK 1385


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,124,609
Number of Sequences: 27780
Number of extensions: 279572
Number of successful extensions: 685
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)