Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14m22
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538...    31   0.75 
11_02_0036 + 7599646-7599950,7600106-7600145,7600403-7600437,760...    28   7.0  
06_03_0913 + 25913231-25913609,25913702-25913775,25914400-259145...    27   9.2  
05_05_0189 + 23106165-23106341,23106606-23107598,23107694-23109013     27   9.2  
05_03_0484 + 14599786-14602197                                         27   9.2  

>06_03_1313 - 29252335-29252446,29253430-29253671,29253770-29253848,
            29254991-29255130,29255262-29255571,29255810-29255952,
            29256106-29256306,29256453-29256581,29256921-29257199,
            29258036-29259720,29261255-29261764,29261901-29262108,
            29264347-29264458,29264594-29264763
          Length = 1439

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -2

Query: 298  DKLYSEFYSLLNETFNNNVAPLLSSIYDEVLTRDFITKNMAKFKTVALKLP 146
            DKL   + S+L +    N+   L+++YD+     F+T    K K  A +LP
Sbjct: 1141 DKLRQWYLSMLQKAIKENIVVELTNLYDQF----FVTAKECKIKVSAARLP 1187


>11_02_0036 +
           7599646-7599950,7600106-7600145,7600403-7600437,
           7600789-7601189,7601281-7601361,7601451-7601536
          Length = 315

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 431 THLFSVIKNEHKICQFGRVFHQIP 502
           TH F  +K E+ IC F R    IP
Sbjct: 198 THSFDAMKKEYYICGFARSIESIP 221


>06_03_0913 +
           25913231-25913609,25913702-25913775,25914400-25914540,
           25914834-25914946,25915359-25915491,25916213-25916351,
           25916428-25916527,25916906-25916963,25917122-25917199,
           25917278-25917376,25917657-25917735,25917826-25917974,
           25918529-25918834,25918994-25919032
          Length = 628

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 148 PVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAA 26
           PVAP++    P + +  ++ +   PA +  S+KN   T AA
Sbjct: 7   PVAPASPSPSPAAAADGEEGEGPAPAAEDDSLKNDVYTAAA 47


>05_05_0189 + 23106165-23106341,23106606-23107598,23107694-23109013
          Length = 829

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +3

Query: 78  TEFFLFLLPLIEVGTYSVVDGATGNLSATVLNLAI 182
           T  F+FLL ++ VG YS V G      A +L LAI
Sbjct: 258 TYVFVFLLVVLLVGFYSDVIGTNSFHGALMLGLAI 292


>05_03_0484 + 14599786-14602197
          Length = 803

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = -2

Query: 220 YDEVLT--RDFITKNMAKFKTVALKLPVAPSTTEYV-PTSISGSKKRKNSVPAKQRSSI 53
           YD +L     F  +++ K     L  P+ P     V P  +SG  K K +VPA  R ++
Sbjct: 349 YDAILNGLEVFKLQDIGKKSLAGLNPPLPPQPKSDVNPKGVSGGGKSKGAVPASIRGAM 407


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,944,438
Number of Sequences: 37544
Number of extensions: 316668
Number of successful extensions: 785
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)