Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14m20
(716 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M25772-1|AAA53372.1| 317|Drosophila melanogaster DNA repair pro... 299 3e-81
BT021447-1|AAX33595.1| 317|Drosophila melanogaster GH01513p pro... 299 3e-81
AY075528-1|AAL68335.1| 317|Drosophila melanogaster RE74511p pro... 299 3e-81
AE014296-3653|AAF51807.1| 317|Drosophila melanogaster CG7490-PA... 299 3e-81
X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros... 31 1.6
AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependen... 31 1.6
AY118783-1|AAM50643.1| 993|Drosophila melanogaster GH13756p pro... 31 1.6
AF145632-1|AAD38607.1| 1225|Drosophila melanogaster BcDNA.GH0603... 31 1.6
AE014134-2033|AAF53072.1| 1225|Drosophila melanogaster CG6230-PA... 31 1.6
AE014297-2608|AAF55620.3| 1788|Drosophila melanogaster CG31043-P... 29 6.3
>M25772-1|AAA53372.1| 317|Drosophila melanogaster DNA repair
protein protein.
Length = 317
Score = 299 bits (733), Expect = 3e-81
Identities = 154/218 (70%), Positives = 165/218 (75%), Gaps = 1/218 (0%)
Frame = -1
Query: 716 DKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVH 537
DKLLE+KV+APARPGAIAPL V+IPA NTGLGPEKTSFFQALSIPTKISKGTIEIINDV
Sbjct: 100 DKLLESKVRAPARPGAIAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVP 159
Query: 536 ILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGV 357
ILKPGDKVGASEATLLNMLNISPFSYGL+V QVYDSG+IF+PEILDIKPEDLRAKFQ GV
Sbjct: 160 ILKPGDKVGASEATLLNMLNISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGV 219
Query: 356 ANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKF-XXX 180
AN+AA+ L++GYPTIASAPHSIANGFKNLL IKE+IKDPSKF
Sbjct: 220 ANLAAVCLSVGYPTIASAPHSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKFAAAA 279
Query: 179 XXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 66
DDDMGFGLFD
Sbjct: 280 SASAAPAAGGATEKKEEAKKPESESEEEDDDMGFGLFD 317
>BT021447-1|AAX33595.1| 317|Drosophila melanogaster GH01513p
protein.
Length = 317
Score = 299 bits (733), Expect = 3e-81
Identities = 154/218 (70%), Positives = 165/218 (75%), Gaps = 1/218 (0%)
Frame = -1
Query: 716 DKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVH 537
DKLLE+KV+APARPGAIAPL V+IPA NTGLGPEKTSFFQALSIPTKISKGTIEIINDV
Sbjct: 100 DKLLESKVRAPARPGAIAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVP 159
Query: 536 ILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGV 357
ILKPGDKVGASEATLLNMLNISPFSYGL+V QVYDSG+IF+PEILDIKPEDLRAKFQ GV
Sbjct: 160 ILKPGDKVGASEATLLNMLNISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGV 219
Query: 356 ANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKF-XXX 180
AN+AA+ L++GYPTIASAPHSIANGFKNLL IKE+IKDPSKF
Sbjct: 220 ANLAAVCLSVGYPTIASAPHSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKFAAAA 279
Query: 179 XXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 66
DDDMGFGLFD
Sbjct: 280 SASAAPAAGGATEKKEEAKKPESESEEEDDDMGFGLFD 317
>AY075528-1|AAL68335.1| 317|Drosophila melanogaster RE74511p
protein.
Length = 317
Score = 299 bits (733), Expect = 3e-81
Identities = 154/218 (70%), Positives = 165/218 (75%), Gaps = 1/218 (0%)
Frame = -1
Query: 716 DKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVH 537
DKLLE+KV+APARPGAIAPL V+IPA NTGLGPEKTSFFQALSIPTKISKGTIEIINDV
Sbjct: 100 DKLLESKVRAPARPGAIAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVP 159
Query: 536 ILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGV 357
ILKPGDKVGASEATLLNMLNISPFSYGL+V QVYDSG+IF+PEILDIKPEDLRAKFQ GV
Sbjct: 160 ILKPGDKVGASEATLLNMLNISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGV 219
Query: 356 ANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKF-XXX 180
AN+AA+ L++GYPTIASAPHSIANGFKNLL IKE+IKDPSKF
Sbjct: 220 ANLAAVCLSVGYPTIASAPHSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKFAAAA 279
Query: 179 XXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 66
DDDMGFGLFD
Sbjct: 280 SASAAPAAGGATEKKEEAKKPESESEEEDDDMGFGLFD 317
>AE014296-3653|AAF51807.1| 317|Drosophila melanogaster CG7490-PA
protein.
Length = 317
Score = 299 bits (733), Expect = 3e-81
Identities = 154/218 (70%), Positives = 165/218 (75%), Gaps = 1/218 (0%)
Frame = -1
Query: 716 DKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVH 537
DKLLE+KV+APARPGAIAPL V+IPA NTGLGPEKTSFFQALSIPTKISKGTIEIINDV
Sbjct: 100 DKLLESKVRAPARPGAIAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVP 159
Query: 536 ILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGV 357
ILKPGDKVGASEATLLNMLNISPFSYGL+V QVYDSG+IF+PEILDIKPEDLRAKFQ GV
Sbjct: 160 ILKPGDKVGASEATLLNMLNISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGV 219
Query: 356 ANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKF-XXX 180
AN+AA+ L++GYPTIASAPHSIANGFKNLL IKE+IKDPSKF
Sbjct: 220 ANLAAVCLSVGYPTIASAPHSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKFAAAA 279
Query: 179 XXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 66
DDDMGFGLFD
Sbjct: 280 SASAAPAAGGATEKKEEAKKPESESEEEDDDMGFGLFD 317
>X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein (
Drosophila retrotransposon412 genome. ).
Length = 1237
Score = 31.1 bits (67), Expect = 1.6
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Frame = -1
Query: 575 ISKGTIEIINDVHILK--PGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEIL 402
+ K T EI ++ ++ + D+V LN +I F +G + YD G ++ IL
Sbjct: 769 LQKQTKEIASEPNVYEVITNDEVRKVVTLQLND-SICLFKHGKKIIARYDVGDLYTNGIL 827
Query: 401 DIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNL 270
D+ R + QAG+ +++ + +A P H + FKN+
Sbjct: 828 DLDQFLQRLELQAGIYDISQIKMA---PWKKIFEHVSIDKFKNM 868
>AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependent
DNA polymerase protein.
Length = 1000
Score = 31.1 bits (67), Expect = 1.6
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Frame = -1
Query: 575 ISKGTIEIINDVHILK--PGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEIL 402
+ K T EI ++ ++ + D+V LN +I F +G + YD G ++ IL
Sbjct: 532 LQKQTKEIASEPNVYEVITNDEVRKVVTLQLND-SICLFKHGKKIIARYDVGDLYTNGIL 590
Query: 401 DIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNL 270
D+ R + QAG+ +++ + +A P H + FKN+
Sbjct: 591 DLDQFLQRLELQAGIYDISQIKMA---PWKKIFEHVSIDKFKNM 631
>AY118783-1|AAM50643.1| 993|Drosophila melanogaster GH13756p protein.
Length = 993
Score = 31.1 bits (67), Expect = 1.6
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -1
Query: 674 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEII 549
GA A L +++ +TGL PE T FF+ + PT K + ++
Sbjct: 925 GASAALVILL---STGLAPELTEFFEIIDFPTDFRKTLLGVL 963
>AF145632-1|AAD38607.1| 1225|Drosophila melanogaster BcDNA.GH06032
protein.
Length = 1225
Score = 31.1 bits (67), Expect = 1.6
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -1
Query: 674 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEII 549
GA A L +++ +TGL PE T FF+ + PT K + ++
Sbjct: 1157 GASAALVILL---STGLAPELTEFFEIIDFPTDFRKTLLGVL 1195
>AE014134-2033|AAF53072.1| 1225|Drosophila melanogaster CG6230-PA
protein.
Length = 1225
Score = 31.1 bits (67), Expect = 1.6
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -1
Query: 674 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEII 549
GA A L +++ +TGL PE T FF+ + PT K + ++
Sbjct: 1157 GASAALVILL---STGLAPELTEFFEIIDFPTDFRKTLLGVL 1195
>AE014297-2608|AAF55620.3| 1788|Drosophila melanogaster CG31043-PA,
isoform A protein.
Length = 1788
Score = 29.1 bits (62), Expect = 6.3
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 433 SYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSLMISIVPF 570
+Y+C T Y + M + LR + E P++ PG + TSL S F
Sbjct: 824 AYSCDTEGYYTSFHMDSGLRTLKEEEPSVMPGTPLQTSLHTSSYSF 869
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,526,220
Number of Sequences: 53049
Number of extensions: 592509
Number of successful extensions: 1438
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3190721655
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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