Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14m20
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   237   8e-63
AC024849-3|AAK68547.1|  327|Caenorhabditis elegans Hypothetical ...    28   7.7  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  237 bits (579), Expect = 8e-63
 Identities = 119/216 (55%), Positives = 146/216 (67%)
 Frame = -1

Query: 713 KLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHI 534
           KLLEN+  APA+ GAIAP  V +P  NTG+GPEKTSFFQAL IPTKI++GTIEI+NDVH+
Sbjct: 101 KLLENRKGAPAKAGAIAPCDVKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEILNDVHL 160

Query: 533 LKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVA 354
           +K GDKVGASE+ LLNML ++PFSYGLVV+QVYD GT++ PE+LD+  E+LR +F +GV 
Sbjct: 161 IKEGDKVGASESALLNMLGVTPFSYGLVVRQVYDDGTLYTPEVLDMTTEELRKRFLSGVR 220

Query: 353 NVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKFXXXXX 174
           NVA++SLA+ YPT+AS  HS+ANG +N+L               IK FI DPSKF     
Sbjct: 221 NVASVSLAVNYPTLASVAHSLANGLQNMLGVAAVTDVSFKEAETIKAFIADPSKF----A 276

Query: 173 XXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 66
                                    SDDDMGFGLFD
Sbjct: 277 AAAPAAAAAPAAAAPAAKKEEPKEESDDDMGFGLFD 312


>AC024849-3|AAK68547.1|  327|Caenorhabditis elegans Hypothetical
           protein Y67D8B.2 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -1

Query: 710 LLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGT 561
           +L   +Q  A   A+  L+  +P   TGL P +   FQAL  P  I+  T
Sbjct: 42  VLNRYMQLEAYCDAVDDLTGALP--KTGLAPNEPDLFQALFFPRSIAPRT 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,754,041
Number of Sequences: 27780
Number of extensions: 290537
Number of successful extensions: 762
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)