Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14m16
(374 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41424 Cluster: Uncharacterized 12.2 kDa protein in EGT... 163 7e-40
UniRef50_O10279 Cluster: Uncharacterized 11.6 kDa protein; n=7; ... 58 4e-08
UniRef50_Q6PZ56 Cluster: Putative uncharacterized protein; n=1; ... 43 0.002
UniRef50_Q54PF2 Cluster: Putative uncharacterized protein; n=1; ... 34 0.74
UniRef50_Q0TT26 Cluster: Putative uncharacterized protein; n=1; ... 33 1.7
UniRef50_A2WNA6 Cluster: Putative uncharacterized protein; n=4; ... 33 2.3
UniRef50_Q4Y6G1 Cluster: Putative uncharacterized protein; n=1; ... 33 2.3
UniRef50_Q22ND9 Cluster: Putative uncharacterized protein; n=2; ... 33 2.3
UniRef50_Q26ES2 Cluster: Outer membrane protein; n=2; Flavobacte... 32 3.9
UniRef50_P12828 Cluster: Early 40.9 kDa protein; n=5; Nucleopoly... 32 3.9
UniRef50_Q8IBA1 Cluster: Putative uncharacterized protein MAL8P1... 31 6.9
UniRef50_Q7RR39 Cluster: Protein with 5'-3' exonuclease domain; ... 31 6.9
UniRef50_Q4Z0R7 Cluster: Putative uncharacterized protein; n=2; ... 31 6.9
UniRef50_A0Q3D9 Cluster: Uncharacterized protein with repeats; n... 31 9.1
UniRef50_Q8IL74 Cluster: Putative uncharacterized protein; n=1; ... 31 9.1
UniRef50_Q5CEM3 Cluster: Putative uncharacterized protein; n=2; ... 31 9.1
UniRef50_Q54L62 Cluster: Putative uncharacterized protein; n=1; ... 31 9.1
UniRef50_Q4U9S5 Cluster: Phosphatidylinositol 4-kinase, putative... 31 9.1
>UniRef50_P41424 Cluster: Uncharacterized 12.2 kDa protein in
EGT-IAP1 intergenic region; n=5;
Nucleopolyhedrovirus|Rep: Uncharacterized 12.2 kDa
protein in EGT-IAP1 intergenic region - Autographa
californica nuclear polyhedrosis virus (AcMNPV)
Length = 108
Score = 163 bits (397), Expect = 7e-40
Identities = 81/99 (81%), Positives = 87/99 (87%)
Frame = -1
Query: 329 MNSGDDDATRLHYSNAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLI 150
MNSGD ATRLH SNAHAKQTLATLFANRNHSSFYEYAI FVSTLLFKNNLNLM ACNLI
Sbjct: 1 MNSGD--ATRLHCSNAHAKQTLATLFANRNHSSFYEYAIAFVSTLLFKNNLNLMTACNLI 58
Query: 149 NTLINFEINVFGKSLLLSKFVNFCIAKQRXGLRFKHKML 33
N+LINFE+N+FGKSLLL+ FVNFCIA G+ +HKML
Sbjct: 59 NSLINFELNMFGKSLLLNGFVNFCIANS-DGVTIQHKML 96
>UniRef50_O10279 Cluster: Uncharacterized 11.6 kDa protein; n=7;
Nucleopolyhedrovirus|Rep: Uncharacterized 11.6 kDa
protein - Orgyia pseudotsugata multicapsid polyhedrosis
virus (OpMNPV)
Length = 104
Score = 58.4 bits (135), Expect = 4e-08
Identities = 32/92 (34%), Positives = 52/92 (56%)
Frame = -1
Query: 308 ATRLHYSNAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFE 129
+TRL ++NA A+Q + L A H + E A+ FV + + N+L+ NL + ++ E
Sbjct: 3 STRLTWTNARAQQAILALAAT-GHGVYCERAVAFVISAITNNSLSWPTLLNLFDLVVAVE 61
Query: 128 INVFGKSLLLSKFVNFCIAKQRXGLRFKHKML 33
N+F KS L+ VNFC+A G +H++L
Sbjct: 62 RNLFKKSWALNALVNFCVA-NGDGFTVQHQLL 92
>UniRef50_Q6PZ56 Cluster: Putative uncharacterized protein; n=1;
Anticarsia gemmatalis MNPV|Rep: Putative uncharacterized
protein - Anticarsia gemmatalis MNPV
Length = 111
Score = 43.2 bits (97), Expect = 0.002
Identities = 22/60 (36%), Positives = 32/60 (53%)
Frame = -1
Query: 254 FANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFEINVFGKSLLLSKFVNFCI 75
FA +H + E AI F + N + +L + ++ E NVF KSL+L+ VNFCI
Sbjct: 8 FAMASHDVYCERAIAFAIKTVTGNMVTWPTLLHLFDFIVTLERNVFNKSLVLNGLVNFCI 67
>UniRef50_Q54PF2 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 542
Score = 34.3 bits (75), Expect = 0.74
Identities = 31/93 (33%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Frame = -1
Query: 365 TPRFS*FNKRSIMNSGDDDATRLHYSNAHAK-QTLATLFANRNHSSF-YEYAITFVSTLL 192
+P FS FNK S ++ G DD+ LH + +K T T N +SF Y + T +
Sbjct: 229 SPTFSNFNKHSQVSRGFDDSQPLHRNTFISKPTTTTTTTTTTNTNSFNYNNSNNNTQTKI 288
Query: 191 FKNNLNLMVACNLINTLINFEINVFGKSLLLSK 93
KN N N N N N + KS L K
Sbjct: 289 NKNQSN-NTYNNNNNNNNNNNNNNYNKSKLFEK 320
>UniRef50_Q0TT26 Cluster: Putative uncharacterized protein; n=1;
Clostridium perfringens ATCC 13124|Rep: Putative
uncharacterized protein - Clostridium perfringens
(strain ATCC 13124 / NCTC 8237 / Type A)
Length = 164
Score = 33.1 bits (72), Expect = 1.7
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -1
Query: 215 ITFVSTLLFKNNLNLMVACNLINTLINFEINVFGKSLLLSKFVNF 81
++FVS LLFK + ++A L N +INF F + L+ FV F
Sbjct: 100 MSFVSALLFKGFNSELIANWLQNIVINFPFAFFTQLFLIQPFVRF 144
>UniRef50_A2WNA6 Cluster: Putative uncharacterized protein; n=4; Oryza
sativa|Rep: Putative uncharacterized protein - Oryza
sativa subsp. indica (Rice)
Length = 1026
Score = 32.7 bits (71), Expect = 2.3
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +1
Query: 76 MQKLTNLLSNKLLPNTLISKLINVLIKLHATIKFKLFLKSNVLTNV 213
+ L+NL+ L N L S+L+ +L KLH+ + KL++ S + T +
Sbjct: 869 ISSLSNLVRLSLRENYLESELVKILGKLHSLLSLKLYVNSYLGTEL 914
>UniRef50_Q4Y6G1 Cluster: Putative uncharacterized protein; n=1;
Plasmodium chabaudi|Rep: Putative uncharacterized
protein - Plasmodium chabaudi
Length = 249
Score = 32.7 bits (71), Expect = 2.3
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +1
Query: 37 ILCLNRNPXRCLAMQKLTNLLSNKLLPNTLISKLINVLIKLHATIKFKLFLKSNVLTN 210
++C+ ++ C + K N ++ N+ + L+N+L+KLH I K K+ ++TN
Sbjct: 134 VICMGKS---CYTLLKKLNFINVYYPANSKLELLLNMLVKLHRKITKKNNEKNEIITN 188
>UniRef50_Q22ND9 Cluster: Putative uncharacterized protein; n=2;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 389
Score = 32.7 bits (71), Expect = 2.3
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +1
Query: 64 RCLAMQKLTNLLSNKLLPNTLISKLINVLIKLHATIKFKLFLKSN 198
+C +QKL ++N + + IS+L N LIKL L LKSN
Sbjct: 182 KCQNLQKLKLQINNNKIGDDGISELANALIKLPELSDLSLLLKSN 226
>UniRef50_Q26ES2 Cluster: Outer membrane protein; n=2;
Flavobacteria|Rep: Outer membrane protein -
Flavobacteria bacterium BBFL7
Length = 823
Score = 31.9 bits (69), Expect = 3.9
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = -1
Query: 359 RFS*FNKRSIMNSGDDDATRLHYSN--AHAKQTLATLFANRNHSSFYE 222
RF+ N+RS+ SG +++ SN + + TL++L RN++ FYE
Sbjct: 502 RFNRTNRRSLRLSGGTAVQQINNSNPISTMENTLSSLLFERNYAKFYE 549
>UniRef50_P12828 Cluster: Early 40.9 kDa protein; n=5;
Nucleopolyhedrovirus|Rep: Early 40.9 kDa protein -
Autographa californica nuclear polyhedrosis virus
(AcMNPV)
Length = 353
Score = 31.9 bits (69), Expect = 3.9
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +1
Query: 331 MERLLNQLNLGVLP 372
MERLLNQLNLGVLP
Sbjct: 1 MERLLNQLNLGVLP 14
>UniRef50_Q8IBA1 Cluster: Putative uncharacterized protein
MAL8P1.20; n=1; Plasmodium falciparum 3D7|Rep: Putative
uncharacterized protein MAL8P1.20 - Plasmodium
falciparum (isolate 3D7)
Length = 777
Score = 31.1 bits (67), Expect = 6.9
Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Frame = -1
Query: 347 FNKRSIMNSGDDDATRLHYSNAH-AKQTLATLFANRNHSSFYEYAITFVSTLLFKNNLNL 171
++ ++I +D+ + Y N + + + ++ + N N+++ Y + S L N+NL
Sbjct: 259 YSLKNINGYNNDNINTILYRNKYNSNNSTSSYYINNNNNNMKRYNSS-TSLLCSNKNINL 317
Query: 170 MVACNLINTLINFEI-NVFGKSLLLSKFVNFCIAKQRXGLRFKHK 39
+ NT+ N + N+F + L+ F + + KQ KHK
Sbjct: 318 SRKSLISNTMHNNKTNNIFSSNRSLASFSKYEL-KQHLISNSKHK 361
>UniRef50_Q7RR39 Cluster: Protein with 5'-3' exonuclease domain;
n=4; cellular organisms|Rep: Protein with 5'-3'
exonuclease domain - Plasmodium yoelii yoelii
Length = 1092
Score = 31.1 bits (67), Expect = 6.9
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = -1
Query: 242 NHSSFYEYAIT--FVSTLLFKNNLNLMVACN-LINTLINFEINVFGKSLLLSKFVNFCIA 72
N + FY+Y+I+ +S + + ++ N N + N +N+F + KF+NFC+
Sbjct: 786 NFNFFYKYSISPSLLSLYYYLSQHDVRTYNNDYTNVMQNINLNIFKNNSDYYKFINFCVN 845
Query: 71 K 69
K
Sbjct: 846 K 846
>UniRef50_Q4Z0R7 Cluster: Putative uncharacterized protein; n=2;
Plasmodium (Vinckeia)|Rep: Putative uncharacterized
protein - Plasmodium berghei
Length = 755
Score = 31.1 bits (67), Expect = 6.9
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = -1
Query: 242 NHSSFYEYAIT--FVSTLLFKNNLNLMVACN-LINTLINFEINVFGKSLLLSKFVNFCIA 72
N + FY+Y+I+ +S + N+ N N + N +N+F + KF+NFC+
Sbjct: 690 NFNFFYKYSISPSLLSLYYYLCQHNVKTYNNDYTNIMQNINLNIFKNNSDYYKFINFCVN 749
Query: 71 K 69
K
Sbjct: 750 K 750
>UniRef50_A0Q3D9 Cluster: Uncharacterized protein with repeats; n=2;
Clostridium|Rep: Uncharacterized protein with repeats -
Clostridium novyi (strain NT)
Length = 836
Score = 30.7 bits (66), Expect = 9.1
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Frame = -1
Query: 290 SNAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFE----IN 123
+N ++ LF + N S E IT + LF NNL + LIN+ I +N
Sbjct: 85 NNMELTNSIQKLFNDLNIQSINEKTITLLVKSLFSNNLLPKFSDTLINSSIETSLIDILN 144
Query: 122 V---FGKSLLLSKFVNFCI 75
+ F KS+ ++K NF I
Sbjct: 145 LYMCFEKSINITKLKNFSI 163
>UniRef50_Q8IL74 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 1076
Score = 30.7 bits (66), Expect = 9.1
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = -1
Query: 302 RLHYSNAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFE 129
R+ + N H K N N+ +Y + + KN++N++ N+IN L N E
Sbjct: 118 RMKFINLHMKMNSRKSQTNMNYDMMQQYYNLYSTCNDNKNSMNVINGMNIINGLNNME 175
>UniRef50_Q5CEM3 Cluster: Putative uncharacterized protein; n=2;
Cryptosporidium|Rep: Putative uncharacterized protein -
Cryptosporidium hominis
Length = 818
Score = 30.7 bits (66), Expect = 9.1
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = -1
Query: 236 SSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFEINVFGKSLL 102
SS Y Y T L++K LN A N IN +NF +N KS L
Sbjct: 45 SSLYGYNNTEGDLLIYKRPLNRSQALNNINLCLNFILNPPEKSKL 89
>UniRef50_Q54L62 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1574
Score = 30.7 bits (66), Expect = 9.1
Identities = 14/42 (33%), Positives = 27/42 (64%)
Frame = -1
Query: 263 ATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLI 138
++L ++ N SF Y+ +F S L KN+L +++ C++I +I
Sbjct: 1506 SSLLSSSNSKSF-NYSQSFQSNNLSKNDLIILIVCSIIGVII 1546
>UniRef50_Q4U9S5 Cluster: Phosphatidylinositol 4-kinase, putative;
n=2; Theileria|Rep: Phosphatidylinositol 4-kinase,
putative - Theileria annulata
Length = 1194
Score = 30.7 bits (66), Expect = 9.1
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = -1
Query: 242 NHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFEINVFGKSLLLSKFVN 84
N S Y F+S +LFKNN +L + +T F+ ++L++ F+N
Sbjct: 220 NTSFGYVRLCNFISKVLFKNNKDLGTLVSRASTWSRFDTKYIKETLIVLLFIN 272
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 290,447,474
Number of Sequences: 1657284
Number of extensions: 4631314
Number of successful extensions: 11841
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 11553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11837
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 14019197511
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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