Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14m16
(374 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc... 30 0.10
SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.24
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 27 0.73
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 1.7
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 24 6.8
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy... 24 6.8
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 24 9.0
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 24 9.0
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 24 9.0
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 24 9.0
>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 30.3 bits (65), Expect = 0.10
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = -1
Query: 347 FNKRSIMNSGDDDA---TRLHYSNAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNL 177
F+ R+++ S D+D RL+YS A T +A + S A+ V+ + KNNL
Sbjct: 140 FSLRTVLQSRDEDLLWRARLYYSFLQADMDYLTNYARPSPDSAVPGAVGTVAIITSKNNL 199
Query: 176 N 174
+
Sbjct: 200 S 200
>SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 29.1 bits (62), Expect = 0.24
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -1
Query: 197 LLFKNNLNLMVACNLINTL-INFEINVFGKS-LLLSKFVN 84
LLFKN+L L+ AC +NT IN+ L+L +F N
Sbjct: 156 LLFKNSLVLLAACYFMNTTPSRLVINLIRSGYLILKRFAN 195
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 27.5 bits (58), Expect = 0.73
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 76 MQKLTNLLSNKLLPNTLISKLINVLIKLHATIKFKLFLKSNVLTNV 213
++ LTN LS LP++LIS I +L KL ++ L ++T V
Sbjct: 385 LKSLTNSLSTMALPDSLISLHIELLRKLCSSENDFCSLLVEIITEV 430
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 1.7
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -1
Query: 179 LNLMVACNLINTLINFEINVFGKSLLLSKFVNF 81
+N+ V+ L+NTLI +I FG ++ + + + F
Sbjct: 183 VNICVSAKLVNTLIIEQIKFFGVNIGIGRAILF 215
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 24.2 bits (50), Expect = 6.8
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = -1
Query: 290 SNAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFEINVFGK 111
S+A Q + T F S+ YEY + + N N + A L N + + I+ F K
Sbjct: 296 SSAQIVQVILTRFQRVTFSTGYEYLGLSDAIFSIEKNFNSLTAYELPNYIRSDIIDDFKK 355
Query: 110 SLL 102
+
Sbjct: 356 EAM 358
>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 537
Score = 24.2 bits (50), Expect = 6.8
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 100 SNKLLPNTLISKLINVLIKLHATIKFKLFLKSNVLTNVMAY 222
S+ +L LIS L++ + L AT KF+ ++ + L + Y
Sbjct: 460 SHAVLLTFLISALVHEFVMLLATGKFRCYILTFQLLQIPLY 500
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 23.8 bits (49), Expect = 9.0
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = -1
Query: 305 TRLHYSNAHAKQTLATLFANRNHSSFYEY-AITFVSTL--LFKNNLNLMVACNLINTLIN 135
TR+H+ NAH L + S +EY +T + + L KN+ ++ L +I
Sbjct: 98 TRIHFLNAHITLFLYPFLNTLSKSKPFEYLRLTSLGVIGALVKNDSPEVINFLLSTEIIP 157
Query: 134 FEINVFGKSLLLSKFVNFCIAKQ 66
+ + LSK V I ++
Sbjct: 158 LCLRIMENGSELSKTVAIFIVQK 180
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 23.8 bits (49), Expect = 9.0
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = -1
Query: 335 SIMNSGDDDATRLHYSNAHAKQTLATLFANRNHSSFYEYAITFVSTLLF 189
S+ S DD A+ + + T A SS Y TFVST L+
Sbjct: 69 SVTESSDDGASTA-LPTTSTESVVVTTSAPAASSSATSYPATFVSTPLY 116
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 23.8 bits (49), Expect = 9.0
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = -1
Query: 326 NSGDDDATRLHYSNAHAKQTLATLFANRNHSSFYEY 219
N D R HY + H+ Q N N SS+ +
Sbjct: 329 NIDDSSIERRHYDSNHSSQIRDHPSTNNNASSYQNF 364
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 23.8 bits (49), Expect = 9.0
Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -1
Query: 137 NFEI-NVFGKSLLLSKFVNFCIAKQ 66
NF++ +FGK + L + +N+C A +
Sbjct: 179 NFKVAKLFGKHIRLEEHINYCKANK 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,295,713
Number of Sequences: 5004
Number of extensions: 21652
Number of successful extensions: 64
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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