Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14m16
         (374 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929...    33   0.097
10_06_0191 - 11631066-11631538,11632011-11632319,11632374-11632572     30   0.52 
08_02_0801 + 21349434-21349438,21349952-21349978,21351175-213512...    28   2.7  
11_06_0125 - 20356683-20357071,20359531-20362285                       27   4.8  
10_08_0912 - 21520088-21520426,21520534-21520674,21521235-215212...    27   6.3  
04_04_1696 + 35448667-35449641,35449726-35450562,35450667-354510...    26   8.4  
03_01_0438 + 3399203-3399297,3399389-3399480,3399638-3399750,340...    26   8.4  

>01_01_1166 +
           9287840-9288040,9289752-9289799,9292166-9292282,
           9293018-9293700,9295214-9297190,9298330-9298441,
           9299848-9299904
          Length = 1064

 Score = 32.7 bits (71), Expect = 0.097
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = +1

Query: 76  MQKLTNLLSNKLLPNTLISKLINVLIKLHATIKFKLFLKSNVLTNV 213
           +  L+NL+   L  N L S+L+ +L KLH+ +  KL++ S + T +
Sbjct: 861 ISSLSNLVRLSLRENYLESELVKILGKLHSLLSLKLYVNSYLGTEL 906


>10_06_0191 - 11631066-11631538,11632011-11632319,11632374-11632572
          Length = 326

 Score = 30.3 bits (65), Expect = 0.52
 Identities = 11/51 (21%), Positives = 31/51 (60%)
 Frame = -1

Query: 200 TLLFKNNLNLMVACNLINTLINFEINVFGKSLLLSKFVNFCIAKQRXGLRF 48
           T ++++ L+++V   L+N +  +   + G +++ ++F ++C AK++    F
Sbjct: 162 TTIYRSKLSMIVLEKLLNKICRYVRIIAGNTVVKARFQDYCKAKKKPARMF 212


>08_02_0801 +
           21349434-21349438,21349952-21349978,21351175-21351249,
           21351333-21351369,21351469-21351552,21351821-21351881,
           21351961-21352067,21352162-21352227,21352366-21352461
          Length = 185

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 242 NHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFE 129
           N   FY YA  +  T   K  + + VAC L+N ++  +
Sbjct: 82  NFQDFYPYAFRYCLTEDKKKCIEIPVACELLNLVLGLQ 119


>11_06_0125 - 20356683-20357071,20359531-20362285
          Length = 1047

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 28  WXNILCLNRNPXRCLAMQKLTNLLSNKLLPN 120
           W  ++C  R+P R +A+Q  +  LS ++ P+
Sbjct: 66  WPGVVCGGRHPERVVALQMSSFNLSGRISPS 96


>10_08_0912 -
           21520088-21520426,21520534-21520674,21521235-21521294,
           21521394-21521493,21521591-21521904,21522253-21522621,
           21522993-21523104,21523627-21523787
          Length = 531

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 22/82 (26%), Positives = 42/82 (51%)
 Frame = -1

Query: 320 GDDDATRLHYSNAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTL 141
           G+ + T L  SN      ++++ A++NH     YAIT    LL +    + ++ +  N  
Sbjct: 282 GNGEDTNL--SNTKCTVEVSSISADKNHMPDVSYAITHY-RLLVEQLERVDLSMSETNIK 338

Query: 140 INFEINVFGKSLLLSKFVNFCI 75
           + F INV+  SL++  ++ + I
Sbjct: 339 LAFWINVY-NSLVMHAYLAYGI 359


>04_04_1696 + 35448667-35449641,35449726-35450562,35450667-35451001,
            35451371-35451497,35451594-35451752,35451872-35453053,
            35453164-35453424,35453513-35453761
          Length = 1374

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -1

Query: 158  NLINTLINFEINVFGKSLLLSKFVNFCI-AKQRXGLRFK 45
            +L+++L++ E++V GKS L  K+   C+ A Q   LR K
Sbjct: 1086 SLLSSLLHPEVSVNGKSSLKGKYSVICVHANQFYTLRKK 1124


>03_01_0438 + 3399203-3399297,3399389-3399480,3399638-3399750,
            3400345-3400610,3400793-3400864,3401023-3401098,
            3401241-3401339,3401432-3401586,3401679-3401783,
            3401880-3401966,3402459-3402543,3402626-3402734,
            3403468-3403544,3403635-3403715,3404137-3404328,
            3404415-3404528,3404650-3404742,3404864-3404990,
            3405075-3405151,3405455-3405502,3405588-3405657,
            3405737-3405810,3405895-3406005,3406222-3406300,
            3406936-3408320
          Length = 1293

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 40   LCLNRNPXRCLAMQKLTNLLSNKLLPN 120
            +C +  P RC  ++ L  LL   LLPN
Sbjct: 1069 MCTSTRPIRCQDVRCLLQLLYRSLLPN 1095


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,352,651
Number of Sequences: 37544
Number of extensions: 109766
Number of successful extensions: 231
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)