Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14m16
(374 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-50|CAD56259.3| 837|Caenorhabditis elegans Hypothetical p... 29 1.1
Z95622-1|CAB09132.2| 480|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z68131-3|CAA92219.2| 480|Caenorhabditis elegans Hypothetical pr... 29 1.4
AF497823-1|AAM18101.1| 479|Caenorhabditis elegans putative Na-H... 29 1.4
AC024817-2|AAU87810.1| 520|Caenorhabditis elegans Hypothetical ... 28 2.5
Z93393-12|CAD18879.1| 268|Caenorhabditis elegans Hypothetical p... 27 5.8
Z93393-11|CAB07698.2| 536|Caenorhabditis elegans Hypothetical p... 27 5.8
AF088286-1|AAC98293.1| 268|Caenorhabditis elegans caspase-relat... 27 5.8
AF088285-1|AAC98292.1| 536|Caenorhabditis elegans caspase-relat... 27 5.8
Z83116-5|CAB05568.2| 450|Caenorhabditis elegans Hypothetical pr... 26 7.6
Z79598-4|CAB01868.2| 745|Caenorhabditis elegans Hypothetical pr... 26 7.6
>Z99281-50|CAD56259.3| 837|Caenorhabditis elegans Hypothetical
protein Y57G11C.37 protein.
Length = 837
Score = 29.1 bits (62), Expect = 1.1
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -1
Query: 272 QTLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFEINVF 117
+++ +++A R F E I F LLF L C LIN LI ++ F
Sbjct: 613 ESVMSVYA-RPLDDFLEMFIQFGYVLLFSPAFPLAAVCALINNLIEIRVDAF 663
>Z95622-1|CAB09132.2| 480|Caenorhabditis elegans Hypothetical
protein B0395.1 protein.
Length = 480
Score = 28.7 bits (61), Expect = 1.4
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Frame = -1
Query: 269 TLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFEIN------VFGKS 108
T +FA +N FY++ IT V TLLF ++ + +++ +N VFG+S
Sbjct: 83 TSCFIFAFQN---FYDFNITIVDTLLFSTVISAVDPVAVLSVFEEIHVNKLLYITVFGES 139
Query: 107 LL 102
LL
Sbjct: 140 LL 141
>Z68131-3|CAA92219.2| 480|Caenorhabditis elegans Hypothetical
protein B0395.1 protein.
Length = 480
Score = 28.7 bits (61), Expect = 1.4
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Frame = -1
Query: 269 TLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFEIN------VFGKS 108
T +FA +N FY++ IT V TLLF ++ + +++ +N VFG+S
Sbjct: 83 TSCFIFAFQN---FYDFNITIVDTLLFSTVISAVDPVAVLSVFEEIHVNKLLYITVFGES 139
Query: 107 LL 102
LL
Sbjct: 140 LL 141
>AF497823-1|AAM18101.1| 479|Caenorhabditis elegans putative Na-H
exchanger isoform 1 protein.
Length = 479
Score = 28.7 bits (61), Expect = 1.4
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Frame = -1
Query: 269 TLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFEIN------VFGKS 108
T +FA +N FY++ IT V TLLF ++ + +++ +N VFG+S
Sbjct: 82 TSCFIFAFQN---FYDFNITIVDTLLFSTVISAVDPVAVLSVFEEIHVNKLLYITVFGES 138
Query: 107 LL 102
LL
Sbjct: 139 LL 140
>AC024817-2|AAU87810.1| 520|Caenorhabditis elegans Hypothetical
protein Y54G2A.38 protein.
Length = 520
Score = 27.9 bits (59), Expect = 2.5
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -1
Query: 299 LHYSNAHAKQTLATLFA-NRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINT 144
LH+ NA+ + + TL A NR S F+ + + ++LF +L ++ + T
Sbjct: 98 LHFGNAYFQYFMVTLMAVNRTTSIFFYFVNEKIWSILFPLSLGAVILVEVFFT 150
>Z93393-12|CAD18879.1| 268|Caenorhabditis elegans Hypothetical
protein Y48E1B.13b protein.
Length = 268
Score = 26.6 bits (56), Expect = 5.8
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 64 RCLAMQKLTNLLSNKLLPNTLISKLINVLIKLHATIKF 177
+C + K NL+ ++++P T S +V+I T F
Sbjct: 158 KCAPISKFWNLMMSRIMPGTFTSLNADVIISFSTTDGF 195
>Z93393-11|CAB07698.2| 536|Caenorhabditis elegans Hypothetical
protein Y48E1B.13a protein.
Length = 536
Score = 26.6 bits (56), Expect = 5.8
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 64 RCLAMQKLTNLLSNKLLPNTLISKLINVLIKLHATIKF 177
+C + K NL+ ++++P T S +V+I T F
Sbjct: 426 KCAPISKFWNLMMSRIMPGTFTSLNADVIISFSTTDGF 463
>AF088286-1|AAC98293.1| 268|Caenorhabditis elegans caspase-related
protein 1B protein.
Length = 268
Score = 26.6 bits (56), Expect = 5.8
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 64 RCLAMQKLTNLLSNKLLPNTLISKLINVLIKLHATIKF 177
+C + K NL+ ++++P T S +V+I T F
Sbjct: 158 KCAPISKFWNLMMSRIMPGTFTSLNADVIISFSTTDGF 195
>AF088285-1|AAC98292.1| 536|Caenorhabditis elegans caspase-related
protein 1A protein.
Length = 536
Score = 26.6 bits (56), Expect = 5.8
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 64 RCLAMQKLTNLLSNKLLPNTLISKLINVLIKLHATIKF 177
+C + K NL+ ++++P T S +V+I T F
Sbjct: 426 KCAPISKFWNLMMSRIMPGTFTSLNADVIISFSTTDGF 463
>Z83116-5|CAB05568.2| 450|Caenorhabditis elegans Hypothetical
protein M01B2.6 protein.
Length = 450
Score = 26.2 bits (55), Expect = 7.6
Identities = 13/51 (25%), Positives = 21/51 (41%)
Frame = -1
Query: 296 HYSNAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINT 144
+YS + + H+ F +TF TL+F+N M N+ T
Sbjct: 98 YYSGTSDSEITINQVSKLTHAIFAFVQLTFDGTLVFRNKNRFMALRNIAKT 148
>Z79598-4|CAB01868.2| 745|Caenorhabditis elegans Hypothetical
protein C44H4.4 protein.
Length = 745
Score = 26.2 bits (55), Expect = 7.6
Identities = 20/75 (26%), Positives = 37/75 (49%)
Frame = -1
Query: 317 DDDATRLHYSNAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLI 138
D+ + +N H KQ + N SS Y F++ ++ N++L ++ + I
Sbjct: 85 DEINVDVELTNEHKKQAKSNPLGNLGDSSSYG----FMNKII--ENMSLYIS----SVEI 134
Query: 137 NFEINVFGKSLLLSK 93
NF+ +VFG S +L +
Sbjct: 135 NFDSDVFGGSFMLQR 149
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,096,647
Number of Sequences: 27780
Number of extensions: 120483
Number of successful extensions: 307
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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