Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14m15
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ...    27   1.7  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   4.0  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    26   4.0  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    25   6.9  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    25   9.1  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    25   9.1  

>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 227

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -1

Query: 155 AADHNLRLN*TTSLISPDSHRSSTSPISNNLRRINYEKI 39
           AAD+ L    T S  SPD++ S +S  ++N+ R  Y+K+
Sbjct: 167 AADNTLPTITTPSSSSPDAYSSGSSRRTSNVLRQAYKKL 205


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 285 TSGPAPGGAAQKVMVVGVQPQHNQGQVSQAPVSVVAKP 172
           T   A   +A  V+     PQ N  Q+  +P S+ +KP
Sbjct: 168 TKSTATTQSADYVVAEHFAPQRNDEQLGNSPASITSKP 205


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 18/60 (30%), Positives = 22/60 (36%)
 Frame = -3

Query: 312 SQNVQSVVVTSGPAPGGAAQKVMVVGVQPQHNQGQVSQAPVSVVAKPVFARGGGGPQPPP 133
           S   Q+V  T+      AAQ        P       + A  + VA PV A     P PPP
Sbjct: 340 SAGYQTVQTTTTTTEAAAAQYPQAAFPPPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPP 399


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 134 LN*TTSLISPDSHRSSTSPISNNLRRINYEKI 39
           +N T  LI  + H  S  PIS     INYE+I
Sbjct: 104 VNKTLGLILSNRHVVSPGPISARASFINYEEI 135


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 4/85 (4%)
 Frame = -3

Query: 333 SQPTIVRSQNVQSVVVTSGPAPGGAA----QKVMVVGVQPQHNQGQVSQAPVSVVAKPVF 166
           S PT     N+ S     GP PGG +    +K+         +  +V    +S    P+ 
Sbjct: 117 SLPTAAGQNNIGSPPTPPGPFPGGLSTDIQEKLKAFHASRSKSMPEVVN-KISSPTTPIV 175

Query: 165 ARGGGGPQPPPELDDLSHLA*QPQK 91
             G  G  P P       L+  P K
Sbjct: 176 GMGQRGSYPLPNSQLAGRLSNSPVK 200


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 17/47 (36%), Positives = 19/47 (40%)
 Frame = -2

Query: 319 SEESKRSVGGGDERTGAGRRSAEGDGRRSAAAAQPRTGQPGASVGGG 179
           S   +    GG    G GR  A G GR  A     R G+ GA  G G
Sbjct: 14  SRGGRGGFNGGRGGFGGGRGGARGGGRGGARGG--RGGRGGARGGRG 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,984,793
Number of Sequences: 5004
Number of extensions: 30091
Number of successful extensions: 86
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)