Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14m15
(635 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z96102-5|CAB54262.2| 1096|Caenorhabditis elegans Hypothetical pr... 32 0.30
Z96102-4|CAB54263.1| 1192|Caenorhabditis elegans Hypothetical pr... 32 0.30
Z81027-6|CAB54178.2| 1096|Caenorhabditis elegans Hypothetical pr... 32 0.30
Z81027-5|CAB54179.1| 1192|Caenorhabditis elegans Hypothetical pr... 32 0.30
U40858-1|AAA83272.1| 1096|Caenorhabditis elegans serine/threonin... 32 0.30
U22183-1|AAA97437.1| 1192|Caenorhabditis elegans serine/threonin... 32 0.40
AF099918-2|AAN63400.1| 219|Caenorhabditis elegans Hypothetical ... 32 0.40
AF099918-1|AAK29840.2| 820|Caenorhabditis elegans Hypothetical ... 32 0.40
Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr... 31 0.52
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ... 31 0.69
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 29 2.1
AF068711-1|AAC17775.2| 1121|Caenorhabditis elegans Hypothetical ... 29 2.1
Z80216-11|CAN99667.1| 984|Caenorhabditis elegans Hypothetical p... 29 2.8
Z80216-10|CAB02286.4| 949|Caenorhabditis elegans Hypothetical p... 29 2.8
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr... 29 2.8
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr... 29 2.8
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr... 29 2.8
AL023823-2|CAN99714.1| 984|Caenorhabditis elegans Hypothetical ... 29 2.8
AL023823-1|CAA19441.4| 949|Caenorhabditis elegans Hypothetical ... 29 2.8
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ... 29 3.7
AF003385-2|AAB54249.1| 773|Caenorhabditis elegans Hypothetical ... 29 3.7
AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical ... 29 3.7
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 28 4.9
AC025724-6|AAG23373.2| 158|Caenorhabditis elegans Hypothetical ... 28 4.9
Z68003-3|CAA91977.1| 849|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 28 6.4
U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protei... 28 6.4
AL110484-17|CAB54408.1| 586|Caenorhabditis elegans Hypothetical... 28 6.4
AF068714-8|AAC17809.2| 86|Caenorhabditis elegans Hypothetical ... 28 6.4
>Z96102-5|CAB54262.2| 1096|Caenorhabditis elegans Hypothetical
protein H39E23.1b protein.
Length = 1096
Score = 32.3 bits (70), Expect = 0.30
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -2
Query: 283 ERTGAGRRSAEGDGRRSAAAAQPRTGQPGASVGGGEARVRSWG 155
E G +A G G S A +G P AS GG AR S G
Sbjct: 41 EMNGTSTATATGGGGTSGATTTASSGAPAASSGGSSARYSSSG 83
>Z96102-4|CAB54263.1| 1192|Caenorhabditis elegans Hypothetical
protein H39E23.1a protein.
Length = 1192
Score = 32.3 bits (70), Expect = 0.30
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -2
Query: 283 ERTGAGRRSAEGDGRRSAAAAQPRTGQPGASVGGGEARVRSWG 155
E G +A G G S A +G P AS GG AR S G
Sbjct: 89 EMNGTSTATATGGGGTSGATTTASSGAPAASSGGSSARYSSSG 131
>Z81027-6|CAB54178.2| 1096|Caenorhabditis elegans Hypothetical
protein H39E23.1b protein.
Length = 1096
Score = 32.3 bits (70), Expect = 0.30
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -2
Query: 283 ERTGAGRRSAEGDGRRSAAAAQPRTGQPGASVGGGEARVRSWG 155
E G +A G G S A +G P AS GG AR S G
Sbjct: 41 EMNGTSTATATGGGGTSGATTTASSGAPAASSGGSSARYSSSG 83
>Z81027-5|CAB54179.1| 1192|Caenorhabditis elegans Hypothetical
protein H39E23.1a protein.
Length = 1192
Score = 32.3 bits (70), Expect = 0.30
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -2
Query: 283 ERTGAGRRSAEGDGRRSAAAAQPRTGQPGASVGGGEARVRSWG 155
E G +A G G S A +G P AS GG AR S G
Sbjct: 89 EMNGTSTATATGGGGTSGATTTASSGAPAASSGGSSARYSSSG 131
>U40858-1|AAA83272.1| 1096|Caenorhabditis elegans serine/threonine
kinase protein.
Length = 1096
Score = 32.3 bits (70), Expect = 0.30
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -2
Query: 283 ERTGAGRRSAEGDGRRSAAAAQPRTGQPGASVGGGEARVRSWG 155
E G +A G G S A +G P AS GG AR S G
Sbjct: 41 EMNGTSTATATGGGGTSGATTTASSGAPAASSGGSSARYSSSG 83
>U22183-1|AAA97437.1| 1192|Caenorhabditis elegans serine/threonine
kinase protein.
Length = 1192
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -2
Query: 283 ERTGAGRRSAEGDGRRSAAAAQPRTGQPGASVGGGEARVRSWG 155
E G +A G G S A +G P AS GG AR S G
Sbjct: 89 EMNGTSTPTATGGGGTSGATTTASSGAPAASSGGSSARYSSSG 131
>AF099918-2|AAN63400.1| 219|Caenorhabditis elegans Hypothetical
protein H05C05.1b protein.
Length = 219
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -2
Query: 388 KTYPDSIFERYGAHRSSQLAANHSEESKRSVGGGDERTGAGRRSAEG 248
+ Y S +RY R S ++A SE R GGG ++ + R SA G
Sbjct: 114 RKYDQSSSQRYQQQRRSSMSAG-SESGGRGGGGGGQKPSSSRGSARG 159
>AF099918-1|AAK29840.2| 820|Caenorhabditis elegans Hypothetical
protein H05C05.1a protein.
Length = 820
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -2
Query: 388 KTYPDSIFERYGAHRSSQLAANHSEESKRSVGGGDERTGAGRRSAEG 248
+ Y S +RY R S ++A SE R GGG ++ + R SA G
Sbjct: 618 RKYDQSSSQRYQQQRRSSMSAG-SESGGRGGGGGGQKPSSSRGSARG 663
>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical
protein ZK287.4 protein.
Length = 1208
Score = 31.5 bits (68), Expect = 0.52
Identities = 20/77 (25%), Positives = 33/77 (42%)
Frame = -3
Query: 345 VVHSSQPTIVRSQNVQSVVVTSGPAPGGAAQKVMVVGVQPQHNQGQVSQAPVSVVAKPVF 166
V +S+ T+V + + + S PA A + V + P N G SQAP S +
Sbjct: 542 VTNSATSTVVDTSSQFQIPYVSSPA--SATSNIFVGPIPPPSNSGSSSQAPDSSQSATNS 599
Query: 165 ARGGGGPQPPPELDDLS 115
+ G G P + ++
Sbjct: 600 SNSGSGESKIPNVGPIA 616
>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
protein Y8A9A.2 protein.
Length = 1360
Score = 31.1 bits (67), Expect = 0.69
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +2
Query: 188 DTGAWLTCPWLCCGC-TPTTITFCAAPPGAGP 280
D GAW TC C GC T T CA+ P P
Sbjct: 1207 DWGAWTTCSATCGGCGTQTRSRTCASAPYGCP 1238
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Frame = -2
Query: 310 SKRSVGGGDERTGAGRRSAEGD--GRRSAAAAQPRTGQPGASVGGGEARVRSWG 155
S S G TG GR G G R + R G GA GG + WG
Sbjct: 41 SDASAGASAGGTGGGRGGGRGGSGGGRGGGSGGGRGGSGGAGAGGSGSGSGGWG 94
>AF068711-1|AAC17775.2| 1121|Caenorhabditis elegans Hypothetical
protein R09A1.1 protein.
Length = 1121
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 364 ERYGAHRSSQLAANHSEESKRSVGGGDERTGAGRRSA 254
+ YG +R S AN ++ + GGG R G GR +A
Sbjct: 105 DNYGNNRGSHGGANMYSQNGGNRGGGGGRVGGGRTAA 141
>Z80216-11|CAN99667.1| 984|Caenorhabditis elegans Hypothetical
protein F10G8.8b protein.
Length = 984
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = -2
Query: 352 AHRSSQLAANHSEESKRSVGGGDERTGAGRRSAEGDGRRSAAAAQPRTGQPGASV 188
+H S+ + HS GG A RR + G R++ +A PR G S+
Sbjct: 426 SHHSNSMMDEHSSTELEDDEGGHNTNTARRRRSRRMGSRTSESADPRGRGRGESL 480
>Z80216-10|CAB02286.4| 949|Caenorhabditis elegans Hypothetical
protein F10G8.8a protein.
Length = 949
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = -2
Query: 352 AHRSSQLAANHSEESKRSVGGGDERTGAGRRSAEGDGRRSAAAAQPRTGQPGASV 188
+H S+ + HS GG A RR + G R++ +A PR G S+
Sbjct: 426 SHHSNSMMDEHSSTELEDDEGGHNTNTARRRRSRRMGSRTSESADPRGRGRGESL 480
>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical protein
F13B9.1c protein.
Length = 1609
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -3
Query: 354 GHIVVHSSQPTIVRSQNVQSVVVTSGPAPGGAAQKVM--VVGVQPQHNQGQVSQ 199
G + + SS PT+ VQSV V+S PAP A + QP QGQ +Q
Sbjct: 1410 GPLTMASSPPTL---PPVQSVPVSSKPAPPSAENQAQNSTSPQQPTQEQGQETQ 1460
>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical protein
F13B9.1b protein.
Length = 1614
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -3
Query: 354 GHIVVHSSQPTIVRSQNVQSVVVTSGPAPGGAAQKVM--VVGVQPQHNQGQVSQ 199
G + + SS PT+ VQSV V+S PAP A + QP QGQ +Q
Sbjct: 1410 GPLTMASSPPTL---PPVQSVPVSSKPAPPSAENQAQNSTSPQQPTQEQGQETQ 1460
>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical protein
F13B9.1a protein.
Length = 1632
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -3
Query: 354 GHIVVHSSQPTIVRSQNVQSVVVTSGPAPGGAAQKVM--VVGVQPQHNQGQVSQ 199
G + + SS PT+ VQSV V+S PAP A + QP QGQ +Q
Sbjct: 1432 GPLTMASSPPTL---PPVQSVPVSSKPAPPSAENQAQNSTSPQQPTQEQGQETQ 1482
>AL023823-2|CAN99714.1| 984|Caenorhabditis elegans Hypothetical
protein F10G8.8b protein.
Length = 984
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = -2
Query: 352 AHRSSQLAANHSEESKRSVGGGDERTGAGRRSAEGDGRRSAAAAQPRTGQPGASV 188
+H S+ + HS GG A RR + G R++ +A PR G S+
Sbjct: 426 SHHSNSMMDEHSSTELEDDEGGHNTNTARRRRSRRMGSRTSESADPRGRGRGESL 480
>AL023823-1|CAA19441.4| 949|Caenorhabditis elegans Hypothetical
protein F10G8.8a protein.
Length = 949
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = -2
Query: 352 AHRSSQLAANHSEESKRSVGGGDERTGAGRRSAEGDGRRSAAAAQPRTGQPGASV 188
+H S+ + HS GG A RR + G R++ +A PR G S+
Sbjct: 426 SHHSNSMMDEHSSTELEDDEGGHNTNTARRRRSRRMGSRTSESADPRGRGRGESL 480
>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
protein Y79H2A.3a protein.
Length = 2129
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 258 AQKVMVVGVQPQHNQGQVSQAPVSVVAKPVFARG-GGGPQPPP 133
+Q + +G+Q GQ +QAP P+ + G GP PPP
Sbjct: 1740 SQSISSMGIQLTPVSGQYTQAPQYQQPPPMQSYGISSGPPPPP 1782
>AF003385-2|AAB54249.1| 773|Caenorhabditis elegans Hypothetical
protein R08F11.7 protein.
Length = 773
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 295 GGGDERTGAGRRSAEGDGRRSAAAAQPRTG 206
GGG R G G RS E DGR+ + + + G
Sbjct: 147 GGGGGRGGDGGRSGEQDGRKKRNSGEQQGG 176
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/54 (33%), Positives = 20/54 (37%)
Frame = -2
Query: 340 SQLAANHSEESKRSVGGGDERTGAGRRSAEGDGRRSAAAAQPRTGQPGASVGGG 179
+ L KR GGG R G G GDG RS + G GGG
Sbjct: 125 ANLRQKRQSRGKRQGGGGGGR-GGGGGGRGGDGGRSGEQDGRKKRNSGEQQGGG 177
>AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical
protein C51G7.3 protein.
Length = 754
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 258 AQKVMVVGVQPQHNQGQVSQAPVSVVAKPVFARG-GGGPQPPP 133
+Q + +G+Q GQ +QAP P+ + G GP PPP
Sbjct: 365 SQSISSMGIQLTPVSGQYTQAPQYQQPPPMQSYGISSGPPPPP 407
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Frame = -2
Query: 295 GGGDERTGAGRRSAEGDGRRSAAAAQPRTG-QPGASVGGG 179
GGG G G + G G AA P+ P A GGG
Sbjct: 367 GGGGAAAGGGYNAGGGGGGAPQAAPAPQAAPAPAAPAGGG 406
>AC025724-6|AAG23373.2| 158|Caenorhabditis elegans Hypothetical
protein Y67D8C.7 protein.
Length = 158
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = -2
Query: 367 FERYGAHRSSQLAANHSEESKRSVGGGDERTGAGRRSAEGDGRRSAAAAQPRTGQPGASV 188
+ + G + S+ S +K GGG + G G++ + ++ Q + QP
Sbjct: 84 YSQGGGQKKSKYGGGQSGGNKYGGGGGGSKYGGGQQ--QQPQQQQGGYGQQQQQQPSKYG 141
Query: 187 GGGEARVRSWG 155
GGG+ + + G
Sbjct: 142 GGGQEQQQGGG 152
>Z68003-3|CAA91977.1| 849|Caenorhabditis elegans Hypothetical
protein E02H4.4 protein.
Length = 849
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = -2
Query: 295 GGGDERTGAGRRSAEGDGRRSAAAAQPRTGQPGASVGGGEARV 167
GGG+ GR SAEG G A+ P G+ + GGGE+ V
Sbjct: 752 GGGESVVPGGRGSAEGGG---GASVVP-DGRGSSDGGGGESVV 790
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 27.9 bits (59), Expect = 6.4
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = -2
Query: 358 YGAHRSSQLAANHSEESKR--SVGGGDERTGAGRRSAEGDGRRSAAAAQPRTGQPGASVG 185
Y SS AA S S GGGD + AG + G G +A AA P +P +
Sbjct: 577 YSGSESSAPAAPEPAPSSGGYSGGGGDAGSAAGGSNYSGGG-ETAPAAPPPAPEPAQTYS 635
Query: 184 G 182
G
Sbjct: 636 G 636
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 27.9 bits (59), Expect = 6.4
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = -2
Query: 358 YGAHRSSQLAANHSEESKR--SVGGGDERTGAGRRSAEGDGRRSAAAAQPRTGQPGASVG 185
Y SS AA S S GGGD + AG + G G +A AA P +P +
Sbjct: 577 YSGSESSAPAAPEPAPSSGGYSGGGGDAGSAAGGSNYSGGG-ETAPAAPPPAPEPAQTYS 635
Query: 184 G 182
G
Sbjct: 636 G 636
>U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protein
139 protein.
Length = 310
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = -2
Query: 301 SVGGGDERTGAGRRSAEGDGRRSAAAAQPRT-GQPGASVGGGE 176
S GG + G G+ G + QP GQPG S G GE
Sbjct: 244 SPGGNGQPGGPGQPGQRGSDGQPGNDGQPGAPGQPGQSGGSGE 286
>AL110484-17|CAB54408.1| 586|Caenorhabditis elegans Hypothetical
protein Y38E10A.17 protein.
Length = 586
Score = 27.9 bits (59), Expect = 6.4
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 1/93 (1%)
Frame = -2
Query: 439 GPVYSAATEICHCRVSAKTYPDSIFERYGAHRSSQLAANHSEESKRSVGGGDERTGAGRR 260
G S+A E+ A+ Y S+F + ++A S G G G G+
Sbjct: 493 GSYGSSANEVKSVGFGAQQYGGSVFAKPSGTGGGYVSAGSSARKSGESGAGGGGAGGGKA 552
Query: 259 -SAEGDGRRSAAAAQPRTGQPGASVGGGEARVR 164
A+ ++A + ++ GA GG +R
Sbjct: 553 GGAKNSASYGSSANEVKSVGFGAQQYGGSVFIR 585
>AF068714-8|AAC17809.2| 86|Caenorhabditis elegans Hypothetical
protein B0348.2 protein.
Length = 86
Score = 27.9 bits (59), Expect = 6.4
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +2
Query: 200 WLTCPWLCCGCTPTTITFC 256
W C WLCC + T+ +C
Sbjct: 54 WPICYWLCCDSSKDTMHYC 72
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,640,962
Number of Sequences: 27780
Number of extensions: 201800
Number of successful extensions: 1063
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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