Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14m15
         (635 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    25   0.47 
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    25   0.47 
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    25   0.47 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   2.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   4.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.3  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 200 WLTCPWLCCGCTPTTITFCA 259
           WLTC  LC  CT + +  CA
Sbjct: 112 WLTCDVLC--CTASILNLCA 129


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 200 WLTCPWLCCGCTPTTITFCA 259
           WLTC  LC  CT + +  CA
Sbjct: 112 WLTCDVLC--CTASILNLCA 129


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 200 WLTCPWLCCGCTPTTITFCA 259
           WLTC  LC  CT + +  CA
Sbjct: 112 WLTCDVLC--CTASILNLCA 129


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 243 VVGVQPQHNQGQVSQAPVSVVAKP 172
           +VGVQP  +    +  P+ + AKP
Sbjct: 496 LVGVQPHQDSATPADQPLDLSAKP 519


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 322 HSEESKRSVGGGDERTGAGRRSAEGD 245
           H +   R  GG   RTG   ++ +GD
Sbjct: 86  HGKGGSRGRGGNRGRTGFNNKNKDGD 111


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -3

Query: 231 QPQHNQGQVSQAPVSVVAKPVFARGGGGPQPPP 133
           QP  N G    +PVS+ A     R   G Q PP
Sbjct: 379 QPPPNFGVSQVSPVSMSALVSAVRSPAGGQLPP 411


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +2

Query: 203 LTCPWLCCGCTPTTITFCAAPPGA 274
           L C +       TT+  C +PP A
Sbjct: 432 LLCVFFLTTIVSTTVILCGSPPSA 455


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 375  IQSSSGTGHIVVHSSQPTIVRS-QNVQSV 292
            +Q+   +GH V+HS+Q  +  S  NV +V
Sbjct: 931  LQTIRLSGHSVLHSAQSVVASSASNVTNV 959


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,764
Number of Sequences: 438
Number of extensions: 2456
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)