Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14m14
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    28   1.3  
SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr...    27   3.1  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    27   4.1  
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   4.1  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    26   7.1  
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr...    25   9.4  

>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 156 PINISISHTFEFIVAIGSVSGHKNSL*PVNS 248
           P+NI+I +  EF+VA  +VS  +    P+NS
Sbjct: 54  PVNIAIPNGLEFVVAFYAVSWQRAICGPLNS 84


>SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 458

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 775 NTKDYIDCIVSNPYR*KRVHVFSQHDERAQRQ-IRRRSSFGQNA 647
           NT DY+  ++ + Y  +  H F +   RA RQ    +SSF Q++
Sbjct: 136 NTIDYLFKVILDRYSLREAHAFVRDRTRAVRQDFSVQSSFSQDS 179


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -1

Query: 621 KNKL-NISNTVIDDDTLLTEMKKLVQILYNQNRMWVVDFNRDMNSYFDLSQAYKLHM 454
           KNKL  +  ++     +  ++K L + ++  ++  V+D+  D   + D SQ+  +H+
Sbjct: 655 KNKLVMLDGSIQAIPEIPQDLKDLYKTVWEISQKTVIDYAADRGPFIDQSQSLNIHL 711


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
 Frame = -3

Query: 715 VFSQHDERAQRQIRRRSSFGQ----NAEANSKTNAKEQTQHFQHGYRRRHAANGNEKISA 548
           VF  H   + +Q RR  S G     N + N+  N     Q+ Q+        N N+  ++
Sbjct: 201 VFQLHHPPSPKQTRRVVSEGPLNGVNYKQNTTNNRVSSFQNSQYSTLNNFQNNSNQSPNS 260

Query: 547 NFIQP 533
           N +QP
Sbjct: 261 NDLQP 265


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +3

Query: 114 TLMSHMPYTTSLYRPINISISHTFEFIVAIGSVSGHKNSL*PVNSWQSCLKLS 272
           T+ S  P  +S + P+  S ++T +    + S SGH +S    N   S LKL+
Sbjct: 57  TITSDTPKVSSQHSPV--SSAYTGDSTTDLDSKSGHSSSQKLSNKVSSALKLT 107


>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 514

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -3

Query: 286 YVPVSDNFRQDCQEFT--GYNEFLCPETEPIATMNSKVCEIEMFMG 155
           Y+P S+    + ++     Y+ F  PET P+ ++ + +  +E+F G
Sbjct: 66  YIPRSEISADELKKLVDRSYSTFRHPETTPLKSLKNGLNVLELFHG 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,168,129
Number of Sequences: 5004
Number of extensions: 64408
Number of successful extensions: 185
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)