Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14m10
(682 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB023025-1|BAA74592.1| 133|Apis mellifera actin protein. 248 5e-68
DQ232888-1|ABB36783.1| 499|Apis mellifera cytochrome P450 monoo... 25 0.67
EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein. 22 6.2
EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein. 22 6.2
DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex det... 21 8.2
DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex det... 21 8.2
DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex det... 21 8.2
DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex det... 21 8.2
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 21 8.2
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 21 8.2
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 21 8.2
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 21 8.2
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 21 8.2
>AB023025-1|BAA74592.1| 133|Apis mellifera actin protein.
Length = 133
Score = 248 bits (606), Expect = 5e-68
Identities = 115/116 (99%), Positives = 116/116 (100%)
Frame = -1
Query: 682 PDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 503
PDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG
Sbjct: 18 PDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 77
Query: 502 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 335
TTMYPGIADRMQKEITALAPSTMKIKIIAPPE+KYSVWIGGSILASLSTFQQMWIS
Sbjct: 78 TTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTFQQMWIS 133
>DQ232888-1|ABB36783.1| 499|Apis mellifera cytochrome P450
monooxygenase protein.
Length = 499
Score = 25.0 bits (52), Expect = 0.67
Identities = 21/62 (33%), Positives = 30/62 (48%)
Frame = -1
Query: 571 NSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV 392
N +K D DI++ Y + V MYP + M+K I+ + KI I P E K +
Sbjct: 342 NKELKYD-DIKEMEYLDKVFKETLRMYPPASILMRKAISDYTFNDTKITI--PKEMK--I 396
Query: 391 WI 386
WI
Sbjct: 397 WI 398
>EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein.
Length = 684
Score = 21.8 bits (44), Expect = 6.2
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -3
Query: 518 RIVRWYHHVPWNRRPYAK 465
RI+ +YH +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441
>EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein.
Length = 684
Score = 21.8 bits (44), Expect = 6.2
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -3
Query: 518 RIVRWYHHVPWNRRPYAK 465
RI+ +YH +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441
>DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.4 bits (43), Expect = 8.2
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +3
Query: 45 SSLIRFSTYNHHS*DYKKILWRVQY 119
SSL YN+++ +YK + + + Y
Sbjct: 83 SSLSNNYNYNNYNNNYKPLYYNINY 107
>DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.4 bits (43), Expect = 8.2
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +3
Query: 45 SSLIRFSTYNHHS*DYKKILWRVQY 119
SSL YN+++ +YK + + + Y
Sbjct: 83 SSLSNNYNYNNYNNNYKPLYYNINY 107
>DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.4 bits (43), Expect = 8.2
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +3
Query: 45 SSLIRFSTYNHHS*DYKKILWRVQY 119
SSL YN+++ +YK + + + Y
Sbjct: 83 SSLSNNYNYNNYNNNYKPLYYNINY 107
>DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.4 bits (43), Expect = 8.2
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +3
Query: 45 SSLIRFSTYNHHS*DYKKILWRVQY 119
SSL YN+++ +YK + + + Y
Sbjct: 83 SSLSNNYNYNNYNNNYKPLYYNINY 107
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 21.4 bits (43), Expect = 8.2
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = -1
Query: 622 QPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVL 512
+ +FLG+ + +YN + D + KDL+ +L
Sbjct: 328 ETTFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQIL 364
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 8.2
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +3
Query: 45 SSLIRFSTYNHHS*DYKKILWRVQY 119
SSL YN+++ +YK + + + Y
Sbjct: 316 SSLSNNYNYNNYNNNYKPLYYNINY 340
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 8.2
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +3
Query: 45 SSLIRFSTYNHHS*DYKKILWRVQY 119
SSL YN+++ +YK + + + Y
Sbjct: 316 SSLSNNYNYNNYNNNYKPLYYNINY 340
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 8.2
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +3
Query: 45 SSLIRFSTYNHHS*DYKKILWRVQY 119
SSL YN+++ +YK + + + Y
Sbjct: 316 SSLSNNYNYNNYNNNYKPLYYNINY 340
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.4 bits (43), Expect = 8.2
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +3
Query: 45 SSLIRFSTYNHHS*DYKKILWRVQY 119
SSL YN+++ +YK + + + Y
Sbjct: 305 SSLSNNYNYNNYNNNYKPLYYNINY 329
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,012
Number of Sequences: 438
Number of extensions: 4157
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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