Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14m06
         (382 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0195 + 5643549-5645090                                           29   1.6  
09_04_0430 + 17502387-17503505                                         28   2.9  
08_02_1012 + 23550314-23551504                                         28   2.9  
10_06_0188 - 11603941-11604528                                         26   8.7  
07_03_1296 + 25583195-25584385                                         26   8.7  
03_05_0629 + 26248960-26249236,26249766-26249894,26250291-262508...    26   8.7  

>09_02_0195 + 5643549-5645090
          Length = 513

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 250 ILPPFTPFLPVFWCNWAFLA 309
           ILPP  P LP+ W +W  LA
Sbjct: 152 ILPPSNPTLPMQWIDWEALA 171


>09_04_0430 + 17502387-17503505
          Length = 372

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 256 PPFTPFLPVFWCNWAFLAAGF 318
           PP  P   +++C W F   GF
Sbjct: 270 PPIVPGTDMYYCTWGFFPVGF 290


>08_02_1012 + 23550314-23551504
          Length = 396

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 256 PPFTPFLPVFWCNWAFLAAGF 318
           PP  P   +++C+W F   GF
Sbjct: 264 PPIVPGTDMYYCSWGFFPMGF 284


>10_06_0188 - 11603941-11604528
          Length = 195

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 256 PPFTPFLPVFWCNWAFLAAG 315
           PP  P   +++C WAF   G
Sbjct: 57  PPIVPGTDMYFCTWAFFPLG 76


>07_03_1296 + 25583195-25584385
          Length = 396

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 256 PPFTPFLPVFWCNWAFLAAGF 318
           PP  P   +++C W F   GF
Sbjct: 193 PPIVPGTDMYYCAWGFYPMGF 213


>03_05_0629 +
           26248960-26249236,26249766-26249894,26250291-26250847,
           26250933-26251250
          Length = 426

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 271 FLPVFWCNWAFLAAGFFVTAIVANEH 348
           F+P++     FLAA  FV  +V N H
Sbjct: 379 FIPLWAAGLMFLAANIFVMLMVINHH 404


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,732,714
Number of Sequences: 37544
Number of extensions: 147272
Number of successful extensions: 386
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)