Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14m05
         (763 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    25   2.5  
M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.              24   4.5  
AY330177-1|AAQ16283.1|  166|Anopheles gambiae odorant-binding pr...    23   7.8  

>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -3

Query: 164 NVKENCKTPTQRQNVCYQXXXXXXXXHNCVNLKK 63
           ++  NC++   RQN+C +         +C N  K
Sbjct: 516 HIASNCRSTADRQNLCIRCGLTGHKARSCQNEAK 549


>M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.
          Length = 613

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -3

Query: 152 NCKTPTQRQNVCYQXXXXXXXXHNCV 75
           +C++P  RQNVC +          C+
Sbjct: 563 DCRSPVDRQNVCIRCGQEGHKAGTCM 588


>AY330177-1|AAQ16283.1|  166|Anopheles gambiae odorant-binding
           protein AgamOBP50 protein.
          Length = 166

 Score = 23.4 bits (48), Expect = 7.8
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +3

Query: 645 TCLWPFLQSLK 677
           TCL PFLQS+K
Sbjct: 14  TCLSPFLQSIK 24


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 703,128
Number of Sequences: 2352
Number of extensions: 13347
Number of successful extensions: 249
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79002570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)