Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14m05
         (763 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z96100-1|CAB09530.2|  964|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U53337-6|AAA96188.2|  510|Caenorhabditis elegans Acetylcholine r...    29   3.6  
Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AC025724-2|AAG23378.2|  167|Caenorhabditis elegans Hypothetical ...    28   6.3  
Z70687-3|CAM35839.1|  332|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>Z96100-1|CAB09530.2|  964|Caenorhabditis elegans Hypothetical
           protein H15N14.1c protein.
          Length = 964

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -2

Query: 651 DRYFNEPTQKNYEYIKKLFLRTKYMDDSIDYKDFNRRILL-IVFKFALNKSASYFPSYKE 475
           D   N+PT K    +KK  L+   ++ ++   D  ++I+     K++    AS  P   E
Sbjct: 281 DAISNQPTPKKVSAVKKAKLQLTPVESALSLLDLMQKIIAESAEKYSPVFEASEVPKDPE 340

Query: 474 IIEVAIKR 451
           I EV +K+
Sbjct: 341 IPEVEVKK 348


>U53337-6|AAA96188.2|  510|Caenorhabditis elegans Acetylcholine
           receptor protein 10 protein.
          Length = 510

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +1

Query: 601 FFNVFIVFLSWLIKIPVSGLFYNL*NV---CRQQIRIFDXSTTFIC 729
           F+ VF++++ WL+ +   G+FY         R++I  FD      C
Sbjct: 282 FYKVFLIWIPWLLLMKRPGVFYKKRRATVQAREEISFFDNGDDDCC 327


>Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical
           protein F53A2.1 protein.
          Length = 859

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
 Frame = -2

Query: 480 KEIIEVAIKRLNKINPDLK---SSPRAMLQHYNECLENLDNPVTDEHHLLTFGKEVATKI 310
           + I   A+   N  N +L     +   M + ++EC EN  NPV  +  +  +  E  +  
Sbjct: 652 RTITHQAVSNWNAKNVNLNFRFGAHNVMAEKFHECPENFKNPVNIQ-FVAPWNIEPVSAN 710

Query: 309 FIEAFEYSYTNTNAISMDKTDEFDF 235
            +E+ E     T+ I +   D+ D+
Sbjct: 711 LLESVEIKLQYTDDILLTIEDQLDY 735


>AC025724-2|AAG23378.2|  167|Caenorhabditis elegans Hypothetical
           protein Y67D8C.4 protein.
          Length = 167

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = -2

Query: 483 YKEIIEVAIKRLNKINPDLKSSPRAM--LQHYNECLENLDNPVTDEHHLLT 337
           +KE+    ++ L+ I+    S+P+A+  L   + C E++DNP+  + H ++
Sbjct: 49  HKELGRCPLEVLHSIHNFEPSTPQAVFELDESSNCQESIDNPMKRQKHFVS 99


>Z70687-3|CAM35839.1|  332|Caenorhabditis elegans Hypothetical
           protein T14C1.3 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 8/41 (19%), Positives = 22/41 (53%)
 Frame = +1

Query: 193 RSCIWQRFQCRLFNKIKFICLVHADGISVGVTVFKRFDEYF 315
           + CI+    C  FN+++ +C++  + +  G  ++ + +  F
Sbjct: 29  QKCIFSNLNCTDFNRLRRVCVLFKEYVDAGEPMYDKIEIEF 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,651,954
Number of Sequences: 27780
Number of extensions: 315760
Number of successful extensions: 852
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)