Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14l19
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    28   1.0  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    27   1.8  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   3.2  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   5.6  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   7.4  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   7.4  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    25   9.7  
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   9.7  

>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 126 EYVPTSISGSKKRKNSVPAKQRSSIKNRRNTT 31
           EY+P SI G+K  K  +  K+   IKN +  T
Sbjct: 472 EYLPDSIKGTKFYKLPIELKEDEEIKNLKTDT 503


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
 Frame = -1

Query: 609  KMSKRKKKVINNNKYILFNS---WYTKIKQPEWPSSPAMWDLVKNTPELADFV 460
            K + +K  V+ N   IL NS   W   IK+P   S P   D   N  +L   +
Sbjct: 923  KSNSKKVTVLRNKLNILNNSLSKWKCLIKKPSDFSEPVSMDFTSNDEQLVQLL 975


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = -1

Query: 630  PVMQDERKMSKRKKKVINNNKYILFNSWYTK 538
            P++ + +K+S +  K++ +N Y   N W+ +
Sbjct: 1060 PILPNLQKLSTQYSKIVRDNDYGNVNCWFNR 1090


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 22/78 (28%), Positives = 40/78 (51%)
 Frame = +2

Query: 122 YSVVDGATGNLSATVLNLAIFLVMKSRVNTSS*MLLSRGATLLLNVSFNKL*NSE*SLSR 301
           YSV++ +T   S+TVLN +  +   S +N+S+ +  S        ++ + + NS   ++ 
Sbjct: 591 YSVLNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITS 650

Query: 302 ISQLSFNSAKFALVSTAV 355
            S L  NS+     STA+
Sbjct: 651 SSVL--NSSTPITSSTAL 666


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -1

Query: 603 SKRKKKVINNNKYILFN-SWYTKIKQPEWP-SSPAMWDLVKNTPEL 472
           S R++ V NNN   +FN S++ KI    +   +  +WD ++N  +L
Sbjct: 232 SLRERFVDNNNSDYIFNVSYHKKIPADGFSLYTREIWDTIENNKDL 277


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
 Frame = -1

Query: 339 NANLAELKESCEMRDKLYSEFYS--LLNETFNNNVAPLLSSIYDEVLTRDFITKNMAKFK 166
           NA +  +K+S      +   F    ++   FNNN+  L   +     + D + ++++K  
Sbjct: 523 NAQVEIVKKSLSSEFDIRQSFKENWVVKSNFNNNLRKLHEKLQSLFASYDKLQEDLSKRL 582

Query: 165 TVALKLPVAPSTTEYVPTSISGSK 94
                L  +P+   YV   +SG++
Sbjct: 583 GKKATLRKSPAKLYYVHLKLSGNE 606


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +1

Query: 454 NEHKICQFGRVFHQIPHGRATRPLGLLDLSV 546
           N +K+C FG   H IP  +       L+  +
Sbjct: 178 NSYKLCDFGSACHPIPGAKTAAEAKQLEYDI 208


>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 581 LTTINTFCLTVGTLRSSSPSGLVARPC 501
           L T+N    TVG +  S   GL+A+ C
Sbjct: 219 LATLNILAQTVGFMAGSFLGGLLAKAC 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,681,462
Number of Sequences: 5004
Number of extensions: 55761
Number of successful extensions: 226
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)