Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14l10
         (794 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   2.5  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   2.5  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   3.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   3.3  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   4.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   7.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   7.5  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   10.0 
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   10.0 
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   10.0 

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -3

Query: 612 KHIDPYPLSRMYYNAANTMFYTTMENYA-VSNCKFNIEDYNNIFKVMENIRK 460
           KH++   L R YY  +N +  TT+++   V++ +F I D     ++   + +
Sbjct: 382 KHVEVARLIRNYYFESNKIDETTLKHLIDVASDRFFITDGEKAARMQAKVNR 433


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -3

Query: 612 KHIDPYPLSRMYYNAANTMFYTTMENYA-VSNCKFNIEDYNNIFKVMENIRK 460
           KH++   L R YY  +N +  TT+++   V++ +F I D     ++   + +
Sbjct: 382 KHVEVARLIRNYYFESNKIDETTLKHLIDVASDRFFITDGEKAARMQAKVNR 433


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +1

Query: 310 DDGDDKPCLNCVIYVAVVFTLLIFFTLCIRRLNSQI 417
           DD D K  + C+   A V   LIF  L   RL S I
Sbjct: 213 DDEDTKVFVTCIFIWAYVIP-LIFIILFYSRLLSSI 247


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +1

Query: 310 DDGDDKPCLNCVIYVAVVFTLLIFFTLCIRRLNSQI 417
           DD D K  + C+   A V   LIF  L   RL S I
Sbjct: 213 DDEDTKVFVTCIFIWAYVIP-LIFIILFYSRLLSSI 247


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +1

Query: 166 LSMNGSW--IFCMCEVYPGGVCNPSFCVC 246
           LS+N S   I C+ +   GG C    C+C
Sbjct: 74  LSINHSACAIRCLAQRRKGGSCRNGVCIC 102


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 560 PCFTRPWKTMPCPIASSTL 504
           PCF  P  ++P P A   L
Sbjct: 469 PCFEEPLPSLPLPGADDDL 487


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 545 PWKTMPCPIASSTLRITITYLR 480
           P +T P P +++ +  TIT+LR
Sbjct: 293 PPETQPTPPSATLVGTTITHLR 314


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 513 FNIEDYNNIFK 481
           FNI D NN+FK
Sbjct: 70  FNILDKNNVFK 80


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 670 QQRYRNSVLRRFRVFEQAAQTHRSVPA 590
           ++ YR+ +L  FR  + A+Q H+ + A
Sbjct: 5   KEHYRHILLFYFRKGKNASQAHKKLCA 31


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 534 YAVSNCKFNIEDYNNIFKVMENIRKHSNKNLN 439
           Y+ S C + I  Y+ I      +    NKN N
Sbjct: 65  YSGSKCTWTITSYHRINLKCSLVEFSENKNCN 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,577
Number of Sequences: 438
Number of extensions: 5095
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)