Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14l09
         (540 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    31   0.033
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    25   1.2  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    25   1.6  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    24   3.7  
AY659931-1|AAT51799.1|  167|Anopheles gambiae lysozyme i-1 protein.    23   5.0  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 30.7 bits (66), Expect = 0.033
 Identities = 34/156 (21%), Positives = 65/156 (41%), Gaps = 4/156 (2%)
 Frame = -2

Query: 518 DNFDAASLASVLFEKSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQ 339
           + +DA     V  EK + ++ +  +   ++      ES+    K  +D   + Q N++  
Sbjct: 341 ETYDALKAERVEKEKLVKEEIKQYDELVSA-----KESKESTLKNSLDKFAKVQANMRAT 395

Query: 338 LDLNKLQQTSVFMQEKLDRIKNDYNNMHKSFKELQLKRISTEKALKSLNDDYAKLAAKNA 159
            +  K     +  +EK  R+    +   K+ KE++      E   +   +  AKL A  A
Sbjct: 396 NERRKKTLEQIAAEEK--RLLELQDVPKKNKKEIEESEAKIESLTRQKTEVEAKLTANLA 453

Query: 158 RLSNENKVLSNK----NIELIKHKNLLQNEYTTITI 63
            L +E KVL  +      ELI+ K  +    + ++I
Sbjct: 454 TLKDETKVLLEEKEKLQTELIELKRAVDESKSALSI 489


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -2

Query: 350  IKRQLD-LNKLQQTSVFMQEKLDRIKNDYNNMHKSFKELQLKRISTEKALKSLNDDYAKL 174
            ++ +LD L K+Q  ++   +KLDR+     + ++ F+  + K    + A + + ++   L
Sbjct: 1010 LQSKLDTLEKIQTPNMKAMQKLDRVTEKIQSTNEEFEAARKKAKKAKAAFEKVKNERCTL 1069


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 5/140 (3%)
 Frame = -2

Query: 479  EKSLLDDAEDSNNAANSDDTMLSESQAILKKL--QIDIAEQTQLNIKRQLD-LNKLQQTS 309
            EK L D   +      + ++++SE Q    K     D  E+ Q +I+   D L+++++  
Sbjct: 694  EKELADFRAELKQTEANINSIVSEMQKTETKQGKSKDAFEKIQADIRLMKDELSRIERFR 753

Query: 308  VFMQEKLDRIKNDYNNMHKSFKELQLKRISTEKALKSLNDDYA--KLAAKNARLSNENKV 135
               +  L + K +   M  + + L+ +      +  S+ D +    L  +  RL+ ENK 
Sbjct: 754  SPKERSLAQCKANLEAMTSTKEGLENELHQELMSQLSVQDQHEVDSLNDEIRRLNQENKE 813

Query: 134  LSNKNIELIKHKNLLQNEYT 75
                 + L   KN L+N  T
Sbjct: 814  AFTSRMSLEVTKNKLENLLT 833


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 11/60 (18%), Positives = 24/60 (40%)
 Frame = -2

Query: 287 DRIKNDYNNMHKSFKELQLKRISTEKALKSLNDDYAKLAAKNARLSNENKVLSNKNIELI 108
           D+I+N    +  S KELQ +     +  + L +  +K      ++  + +        L+
Sbjct: 629 DKIRNQRGQIENSIKELQERCAELREQKRDLQEQLSKYQQTKMKVKRQEQKCKELTARLV 688


>AY659931-1|AAT51799.1|  167|Anopheles gambiae lysozyme i-1 protein.
          Length = 167

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 352 LSCVCSAMSICSFFSIACDSD 414
           LSC+C A S C   S+ C  D
Sbjct: 42  LSCICEASSGCD-ASLRCSGD 61


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 451,296
Number of Sequences: 2352
Number of extensions: 6870
Number of successful extensions: 43
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 50320221
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)