Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14l09
         (540 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    29   0.040
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    28   0.070
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   0.86 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.1  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   1.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   2.6  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    23   2.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   4.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   6.1  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 28.7 bits (61), Expect = 0.040
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
 Frame = -2

Query: 281 IKNDY--NNMHKSFKELQLKRISTEKALKSLNDD----YAKLAAKNARLSNENKVLSNKN 120
           +K+ Y  NN+H   KE     + T+ + K ++D+    +  +   +    NEN++L  +N
Sbjct: 282 VKSQYQANNVHYQGKE---NILWTQASAKGISDNGVLFFGLVGDTSLACWNENRLLDRRN 338

Query: 119 IELI-KHKNLLQ 87
           IE++ K+K  LQ
Sbjct: 339 IEVVAKNKETLQ 350


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 27.9 bits (59), Expect = 0.070
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 41  RFGDTFI*L*WLC-TRFVINFCV*SIQYFYLIKPYFRYSIW 160
           RF DT+I    +C T  ++N C  S+  +  IK   RY  W
Sbjct: 96  RFCDTWIAFDVMCSTASILNLCAISLDRYIHIKDPLRYGRW 136


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +2

Query: 71  WLCTRFVINFCV*SI-QYFYLIKP 139
           W+CT  ++N C  S+ +Y  + +P
Sbjct: 147 WMCTASILNLCAISLDRYLAVTRP 170


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 77  CTRFVINFCV*SIQYFYLIKPYFRYSIWR 163
           CT  ++N C+ S+  F  I    +Y + R
Sbjct: 125 CTASILNLCMISVDRFCAITKPLKYGVKR 153


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 152 SIWRF*PQVLRNHH*AILVPFQLKFVLVAI 241
           ++WRF     +N   A L+P+ L  VL  I
Sbjct: 3   NVWRFPYLCYKNGGGAFLIPYFLTLVLAGI 32


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 149 NENKVLSNKNIELIKHKN 96
           NEN+ L  +NIE++   N
Sbjct: 328 NENRPLKRRNIEIVAKNN 345


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 227 RISTEKALKSLNDDYAKLAAKNARLSNENKVLSNKNIE 114
           +++ +KA      DY  L   N  +S E+  LS  NI+
Sbjct: 709 QVTWKKAAGDTPGDYTDLKLSNPDISVEDGTLSINNIQ 746


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -2

Query: 209 ALKSLNDDYAKLAAKNARLSNENKVLSNKNIELIKHKNLLQNEYTT 72
           A KS  D   +  +  + L+N   VL  ++  L  H NLL N Y+T
Sbjct: 369 ASKSHGDLELRQRSSKSLLAN---VLDLEDNALASHNNLLNNVYST 411


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 151 VTKIRFYQIKILN*LNTKIYYKTSTQPLQSYKCIT 47
           +TK   YQ K  N     +Y +   Q  +  KC+T
Sbjct: 215 ITKNAVYQCKYGNNCEIDMYMRRKCQECRLKKCLT 249


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 151 VTKIRFYQIKILN*LNTKIYYKTSTQPLQSYKCIT 47
           +TK   YQ K  N     +Y +   Q  +  KC+T
Sbjct: 12  ITKNAVYQCKYGNNCEIDMYMRRKCQECRLKKCLT 46


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 131 IKPYFRYSIWR 163
           IKPY  Y +WR
Sbjct: 139 IKPYDEYYVWR 149


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 134 LSNKNIELIKHKNLLQNEYTTITII*M 54
           L + NI L +H ++    Y T+TI+ M
Sbjct: 232 LLSYNILLRRHYSMNSTTYVTLTIVLM 258


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,554
Number of Sequences: 438
Number of extensions: 1948
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)