Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14l05
         (481 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75547-8|CAA99898.1|  126|Caenorhabditis elegans Hypothetical pr...    67   7e-12
Z66565-5|CAA91482.2|  766|Caenorhabditis elegans Hypothetical pr...    31   0.33 
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr...    28   4.0  
U53151-2|AAN73859.1|  385|Caenorhabditis elegans Serpentine rece...    28   4.0  
Z81540-1|CAB04402.1|  186|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z81497-8|CAC70080.1|  707|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z75953-7|CAB00101.2|  707|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U00181-1|AAA18259.1|  707|Caenorhabditis elegans protein kinase ...    27   5.3  
AF039052-5|AAF98626.2|  586|Caenorhabditis elegans Hypothetical ...    27   5.3  
Z22180-5|CAA80174.2|  717|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in bl...    27   9.3  
U41007-13|AAA82271.2|  307|Caenorhabditis elegans (s. pombe chro...    27   9.3  

>Z75547-8|CAA99898.1|  126|Caenorhabditis elegans Hypothetical
           protein R11D1.8 protein.
          Length = 126

 Score = 66.9 bits (156), Expect = 7e-12
 Identities = 52/133 (39%), Positives = 72/133 (54%)
 Frame = -2

Query: 414 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 235
           MS +L W +IRNN+AFL  +R I K FS E  N+  ++S +Y+GL +K A+ V  +   K
Sbjct: 1   MSDALVWQVIRNNSAFLRTQRGIGKRFSTEKFNLKKVNSPKYSGLANKHAIDV--SAAAK 58

Query: 234 GFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAIL 55
           G  V  K  K   +PAK +        ++  +  V+RL K N       K   RRA+AI+
Sbjct: 59  GVVVSTKNEKG--RPAKAVTTSTL---SKTPVASVRRLAK-NAGFNKFNKLAQRRAAAIV 112

Query: 54  RSQRPIKAKKAKT 16
           RSQ   KAK  KT
Sbjct: 113 RSQVK-KAKVQKT 124


>Z66565-5|CAA91482.2|  766|Caenorhabditis elegans Hypothetical
           protein T04F8.6 protein.
          Length = 766

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = -1

Query: 460 CEHVVFGVEIGLNRKNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQC 314
           CEH+   + I   R+N+++ ELD +  QQ I   EA Y   +++  E+C
Sbjct: 275 CEHMQKQIHIANQRRNMLIEELDQN--QQSI---EASYNNRLKEMEERC 318


>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
           protein F12F6.6 protein.
          Length = 1126

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 104 TAQTYARLPFVVLQPSSAPRGPSKQKRLRPAAT 6
           T Q +A +P  V  PS+ P GP +  +  PA T
Sbjct: 113 TPQQFAAVPQSVQAPSATPAGPLQAMQQAPAPT 145


>U53151-2|AAN73859.1|  385|Caenorhabditis elegans Serpentine
           receptor, class r protein10 protein.
          Length = 385

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 317 LFGSLLNGFLILRFFTRNALLLRMIIQFS 403
           L  SL+NG  I  FF  N LL  +I+ F+
Sbjct: 255 LLWSLINGIYITSFFNSNPLLYSIILGFN 283


>Z81540-1|CAB04402.1|  186|Caenorhabditis elegans Hypothetical
           protein F46B3.1 protein.
          Length = 186

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 403 TELDDHPQQQCIPCEEAQYQKAVQQGAEQCD*PPLLQVQRLDS 275
           ++ +D  Q    PCE  QYQK   +    C  PP + V + D+
Sbjct: 59  SDTNDECQLDMSPCETDQYQKICPKTCNVC--PPAICVDQWDN 99


>Z81497-8|CAC70080.1|  707|Caenorhabditis elegans Hypothetical
           protein F57F5.5 protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 333 SKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVY 217
           SK P    ++H F +  ++ K + G V   +RKG   VY
Sbjct: 366 SKVPGGTLSIHDFTFMKVLGKGSFGKVMLAERKGTDEVY 404


>Z75953-7|CAB00101.2|  707|Caenorhabditis elegans Hypothetical
           protein F57F5.5 protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 333 SKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVY 217
           SK P    ++H F +  ++ K + G V   +RKG   VY
Sbjct: 366 SKVPGGTLSIHDFTFMKVLGKGSFGKVMLAERKGTDEVY 404


>U00181-1|AAA18259.1|  707|Caenorhabditis elegans protein kinase C
           protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 333 SKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVY 217
           SK P    ++H F +  ++ K + G V   +RKG   VY
Sbjct: 366 SKVPGGTLSIHDFTFMKVLGKGSFGKVMLAERKGTDEVY 404


>AF039052-5|AAF98626.2|  586|Caenorhabditis elegans Hypothetical
           protein T22D1.4 protein.
          Length = 586

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 229 ESLPVRVLHDTNGFLVNQAVVPEGVEVSHIVRLLAERLFDIALLHK 366
           E+ PV+V ++ N   V   +V   +EVSH   +  E    I L+HK
Sbjct: 192 ETKPVKVHYENNSPFVIATIVERFIEVSHWGNIAVEEY--IELVHK 235


>Z22180-5|CAA80174.2|  717|Caenorhabditis elegans Hypothetical
           protein K11H3.4 protein.
          Length = 717

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 341 FLILRFFTRNALLLRMIIQFSDDDIFTV*TYFYT 442
           +L +RFF  N L+  M ++  DDDI    T FYT
Sbjct: 372 YLTIRFFFENFLIYPMEMEDIDDDI----TVFYT 401


>U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 2 protein.
          Length = 572

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -1

Query: 406 VTELDDHPQQQCIP-CEEAQYQKAVQQGAEQCD*PPLLQVQRLDS--QESRWCR 254
           V + + H   +C P C++A  Q   QQ A QC  P   Q Q+  S  Q+++ C+
Sbjct: 197 VQQCNQHCNLECQPTCQQAVSQ-CQQQCAPQCQQPSAPQCQQCQSSCQQTQQCQ 249


>U41007-13|AAA82271.2|  307|Caenorhabditis elegans (s. pombe
           chromosome segregationprotein) homolog protein 1
           protein.
          Length = 307

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 107 TTAQTYARLPFVVLQPSSAPRGPSKQKRLRP 15
           +T  T  R P ++  PSS P GPSK    +P
Sbjct: 213 STIPTNRRAPMLIA-PSSTPAGPSKPTARKP 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,352,300
Number of Sequences: 27780
Number of extensions: 239743
Number of successful extensions: 634
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)