Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14l04
(264 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 28 0.19
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 0.43
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 1.3
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 1.3
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 25 2.3
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 24 3.0
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy... 24 4.0
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 24 4.0
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 24 4.0
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po... 23 5.3
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran... 23 5.3
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 23 7.0
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 23 7.0
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 23 7.0
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 23 9.2
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 23 9.2
SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom... 23 9.2
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c... 23 9.2
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 28.3 bits (60), Expect = 0.19
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 39 RNMARIYQLAVDLGGRERSLNRCREKSSFVILKNRPDVVVQYG 167
R +A Y+ + LGG++ S+ EK F + N DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 27.1 bits (57), Expect = 0.43
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -2
Query: 194 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 99
CY P + + L ++I+T+L DN ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199
>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 320
Score = 25.4 bits (53), Expect = 1.3
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -2
Query: 146 RTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVSSE 33
R +LKD LS S+ SLPS Q + H SE
Sbjct: 57 RKILKDVSLKRLSKSLDRSLPSENTIDQ-ISFNHAMSE 93
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 1.3
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 54 IYQLAVDLGGRERSLNRCREKSSFVILKNRPDVV 155
++Q A+ LG RS RC KSSF+ + DVV
Sbjct: 33 LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65
>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 24.6 bits (51), Expect = 2.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 203 DPSCYFSTPPFDTVLYDNIRT 141
DP+ Y PFDTV D + T
Sbjct: 706 DPAAYDKISPFDTVDIDGLTT 726
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 24.2 bits (50), Expect = 3.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 259 IRNWPSRFLLS*APESTSSIPPATFQ 182
IR W S+F+ S A + + P T Q
Sbjct: 128 IREWSSKFMNSKASQKQQMLSPETMQ 153
>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 23.8 bits (49), Expect = 4.0
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -2
Query: 260 HKELALKVSSIIGTRVYVFDPSCY 189
H E LKV II T Y D S Y
Sbjct: 40 HHEEFLKVCDIISTFTYQLDASIY 63
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 23.8 bits (49), Expect = 4.0
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 247 PSRFLLS*APESTS-SIPPATFQLLPSIPYCTTTS 146
P+ L+ STS S PP T L+ ++P TTT+
Sbjct: 172 PATVLIVTTSGSTSTSCPPPTTILIVTVPTTTTTT 206
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 23.8 bits (49), Expect = 4.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 167 TVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLV 57
TVL + I+ V+K + A+ +LP +Y QL+
Sbjct: 360 TVLSNGIKKVIKTITASSRHANYAKALPRCSVYLQLL 396
>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 433
Score = 23.4 bits (48), Expect = 5.3
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = -2
Query: 209 VFDPSCYFSTPPF 171
+FDP C ++ PP+
Sbjct: 260 IFDPDCAYAFPPY 272
>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
transcription factor Ams2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 697
Score = 23.4 bits (48), Expect = 5.3
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -2
Query: 203 DPSCYFSTPPFDTVL 159
D CYF TPP T L
Sbjct: 579 DLECYFRTPPKPTTL 593
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 23.0 bits (47), Expect = 7.0
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1
Query: 40 ETWRESTNWR*ISEEG 87
E W + NW+ SEEG
Sbjct: 813 EAWTRAFNWQKASEEG 828
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 23.0 bits (47), Expect = 7.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1
Query: 111 LCIYSSFSPFLRDLPPVGRFSPCF 40
LC+ S+F P +R P+ S F
Sbjct: 520 LCVTSAFMPAIRSPSPINFLSSMF 543
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 23.0 bits (47), Expect = 7.0
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -1
Query: 111 LCIYSSFSPFLRDLPPVGRFSP 46
LC YS SP R+LP F P
Sbjct: 502 LCEYSEESPLYRELPCHHIFHP 523
>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 314
Score = 22.6 bits (46), Expect = 9.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 143 TVLKDNKTALLSASIQASLPSSEIYRQLVDSR 48
TV +++ + S A L SEIY+QL D R
Sbjct: 163 TVYRNHLLTCETDSALAQLFKSEIYQQLSDFR 194
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 22.6 bits (46), Expect = 9.2
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = -2
Query: 257 KELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKD 129
+++ L +S IG +DP T T + DNI+ ++D
Sbjct: 112 RQMQLWEASQIGKAETAYDPKTQTFTESLITRMIDNIQINIRD 154
>SPCC584.14 |mug160||conserved eukaryotic
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 22.6 bits (46), Expect = 9.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 170 DTVLYDNIRTVLKDNKTALLSASIQASLPSSEI 72
D V YD ++ D+ ++L + S PSS I
Sbjct: 253 DYVSYDTTISLKNDDSSSLGDMEFETSQPSSSI 285
>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 596
Score = 22.6 bits (46), Expect = 9.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 66 PVGRFSPCFFRTPLEST 16
P R SP FF +P EST
Sbjct: 503 PPQRTSPSFFVSPTEST 519
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,033,333
Number of Sequences: 5004
Number of extensions: 16893
Number of successful extensions: 63
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -