Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14l04
         (264 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical p...    27   1.4  
Z82288-2|CAB05319.1|  485|Caenorhabditis elegans Hypothetical pr...    27   1.8  
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ...    27   1.8  
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related...    27   1.8  
U49829-1|AAA93382.1|  138|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AF040655-6|AAB95043.2|  296|Caenorhabditis elegans Serpentine re...    25   7.4  
Z82084-2|CAB04976.1|  536|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z77665-3|CAB01218.1|  103|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z75542-2|CAA99862.2|  712|Caenorhabditis elegans Hypothetical pr...    25   9.8  
U80954-5|AAB38096.1|  822|Caenorhabditis elegans Hypothetical pr...    25   9.8  
AF100663-2|AAC68981.2|  532|Caenorhabditis elegans Udp-glucurono...    25   9.8  
AF068708-1|AAC17759.1|  452|Caenorhabditis elegans Hypothetical ...    25   9.8  

>Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical
           protein T20B3.15 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -2

Query: 209 VFDPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVSS 36
           ++D +C F+   +  + YD I T  +      LS S  AS+ S    R L+ +  V S
Sbjct: 235 IYDETCVFNYDNYCYIPYDQINTSKQGQSICELSGSNLASIRSGNENRFLMSTVSVFS 292


>Z82288-2|CAB05319.1|  485|Caenorhabditis elegans Hypothetical
           protein ZK896.4 protein.
          Length = 485

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -2

Query: 158 YDNIRTVLKDNKTALLSASIQASLPSSEIYR--QLVDSRHVSSELLWSLRKILI 3
           +DN   +  D + +LL+    ASL  + I R  Q+ D   ++S  L +L ++L+
Sbjct: 162 FDNSTVIQADTRVSLLATYPSASLDFTPILRATQVYDGPSINSTHLGNLYQVLV 215


>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
           repeats, ras-likedomain, kinase protein 1 protein.
          Length = 2395

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 64  WR*ISEEGREA*IDAERRAVLLSLRTVLMLSYNTVS 171
           W  +   GR   + A     L SLRT+LMLS N+++
Sbjct: 50  WNRVDRHGRTPLMLAAHNGKLDSLRTILMLSPNSLN 85


>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
           kinase protein.
          Length = 2393

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 64  WR*ISEEGREA*IDAERRAVLLSLRTVLMLSYNTVS 171
           W  +   GR   + A     L SLRT+LMLS N+++
Sbjct: 50  WNRVDRHGRTPLMLAAHNGKLDSLRTILMLSPNSLN 85


>U49829-1|AAA93382.1|  138|Caenorhabditis elegans Hypothetical
           protein F27D9.3 protein.
          Length = 138

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 26  KGVRKKHGENLPTGGRSRRKGEKLE 100
           +GVR+  G  +  GGR +++G+K E
Sbjct: 75  RGVRRGEGGRVEEGGREKKQGKKNE 99


>Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical
           protein F40F8.5 protein.
          Length = 420

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 35  RKKHGENLPTGGRSRRKGE 91
           RKKHG ++   GR RR G+
Sbjct: 108 RKKHGTHVDHHGRVRRNGD 126


>AF040655-6|AAB95043.2|  296|Caenorhabditis elegans Serpentine
           receptor, class x protein112 protein.
          Length = 296

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 66  AVDLGGRERSLNRCREKSSFVILKNRPDVVVQYGIEG 176
           AVD      S   C  +S  +++    DVVV +G++G
Sbjct: 232 AVDAANNAASTKYCENQSCIMLISMSVDVVV-FGVDG 267


>Z82084-2|CAB04976.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK1053.2 protein.
          Length = 536

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 223 APESTSSIPPATFQLLPSIPYCTTTSGRFLRI 128
           A  STS+I P T  +L S     TT  +F +I
Sbjct: 290 ATNSTSTIAPTTHTILSSTTEVKTTRKQFKKI 321


>Z77665-3|CAB01218.1|  103|Caenorhabditis elegans Hypothetical
           protein K02E11.4 protein.
          Length = 103

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 113 LSASIQASLPSSEIYRQLVDSRHVSS 36
           ++A++  SLP S  YR+LV+ + V S
Sbjct: 37  VNATVTISLPVSANYRRLVNKKKVPS 62


>Z75542-2|CAA99862.2|  712|Caenorhabditis elegans Hypothetical
           protein F55D12.2 protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -2

Query: 131 DNKTALLSASIQASLPSSEIYRQLVDSRHVSSELL 27
           +N  +LL A +  +LP S ++  L+D+RH+  + L
Sbjct: 42  ENLVSLL-ALLSDTLPPSTLFTVLLDTRHIQLKQL 75


>U80954-5|AAB38096.1|  822|Caenorhabditis elegans Hypothetical
           protein T07F8.1 protein.
          Length = 822

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 35  RKKHGENLPTGGRSRRKGEKLE 100
           RK+HG+NL   G + +K ++LE
Sbjct: 6   RKEHGKNLGVLGPAAKKQKRLE 27


>AF100663-2|AAC68981.2|  532|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein19 protein.
          Length = 532

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +3

Query: 69  VDLGGRERSLNRCRE-KSSFV-ILKNRPDVVVQYGIEGRS*KVAGGIEDVDSGAYDRRN 239
           +  G   RS++   E K++F+ ++K+ PD    +  E  + K   GIE+V  G +  +N
Sbjct: 301 ISFGSNARSVDMPLEYKNTFLQVIKSMPDTTFIWKYEDLNDKFTEGIENVYLGDWLPQN 359


>AF068708-1|AAC17759.1|  452|Caenorhabditis elegans Hypothetical
           protein C18G1.7 protein.
          Length = 452

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -2

Query: 200 PSCYFSTPPFDTVLYD-NIRTVLKDNKTALLSASIQASLPSSEIYRQLVD 54
           P+CY+S+  F+  LY+  +  +LK  K  +L       L   ++  +L D
Sbjct: 102 PNCYYSSHVFEVSLYNVPLEELLKIRKVNILINGKVIDLNIKQVMPKLKD 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,717,659
Number of Sequences: 27780
Number of extensions: 94966
Number of successful extensions: 321
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 12,740,198
effective HSP length: 66
effective length of database: 10,906,718
effective search space used: 229041078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)