Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14l04
         (264 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   3.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    20   4.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   4.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    19   7.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    19   7.8  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    19   7.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    19   7.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           19   7.8  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 155 DNIRTVLKDNKTALLSASIQASLPS-SEIYRQL 60
           D IRT  KD+ +++     +A++P  +E +R L
Sbjct: 330 DEIRTRYKDSSSSVEGWENRATIPELNEEFRDL 362


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 4.5
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -3

Query: 220 PESTSSIPPATFQLLPSIPYCTTTSGRF 137
           P+S  S   A   L+PS P C      F
Sbjct: 391 PKSIKSGDAAIVMLVPSKPMCAEAFQEF 418


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 4.5
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +3

Query: 207  DVDSGAYDRRNLEGQFL 257
            DV  G YD     G FL
Sbjct: 1268 DVSEGIYDGSGANGSFL 1284


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 81  LRDLPPVGRFSPCFFRTPLES 19
           LRDL     F+P  F + LE+
Sbjct: 170 LRDLKETYPFNPVLFISSLEN 190


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 81  LRDLPPVGRFSPCFFRTPLES 19
           LRDL     F+P  F + LE+
Sbjct: 208 LRDLKETYPFNPVLFISSLEN 228


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 102 YSSFSPFLRDLPPVGRF 52
           Y ++      LPPVG+F
Sbjct: 45  YEAYEGIPYALPPVGKF 61


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 108 REKSSFVILKNRPDVVVQYGIEG 176
           R  + FV+   RP  V +Y  EG
Sbjct: 351 RANTLFVLTLQRPQDVDKYPAEG 373


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 102 YSSFSPFLRDLPPVGRF 52
           Y ++      LPPVG+F
Sbjct: 45  YEAYEGIPYALPPVGKF 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,273
Number of Sequences: 438
Number of extensions: 1505
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4887441
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)