Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14k24
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0092 + 722744-723459,723542-723711,723792-724885                 32   0.57 
10_06_0114 - 10911713-10911724,10913642-10913772,10913869-109142...    31   1.00 
04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202     29   3.0  

>01_01_0092 + 722744-723459,723542-723711,723792-724885
          Length = 659

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
 Frame = -2

Query: 550 ILYNQNRMWVVDFNRDMNSYFDLSQAYKLHLYVDLNTVIMFITMPLLKSTTVPFNLYRAM 371
           I YN++R WVVD N D NS   L     L  + D+ T +   T  +  +T +  N  RA+
Sbjct: 92  ISYNESRFWVVDANLD-NSSCPLPLWNNLPYFNDMGTKL--YTSAVRWATFL--NCSRAI 146

Query: 370 TLPFCRGTMCLLIISGNEYF--GITDSKNYYV 281
                    CL   SGN  F   +T S +YYV
Sbjct: 147 NNGMYMPVACL---SGNTSFVYVLTTSSSYYV 175


>10_06_0114 -
           10911713-10911724,10913642-10913772,10913869-10914229,
           10914339-10915081,10918916-10918964,10919063-10919334,
           10919426-10919519,10919618-10920000,10920504-10920575,
           10920656-10920778,10920875-10921048,10921115-10921579,
           10921662-10921839
          Length = 1018

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 17/54 (31%), Positives = 21/54 (38%)
 Frame = -1

Query: 674 RSSFGQNAEANSKTNAKEQTQHFQHGYRRRHAANGNEKISANFIQPKPHVGSGF 513
           +S  G       +   +E     Q  YR R  A  N  I ANF    P +GS F
Sbjct: 165 QSDGGNICRDEKREKQREDRNRKQREYRARKKAESNNAILANFDATTPIIGSSF 218


>04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202
          Length = 711

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = -1

Query: 710 QHDERAQRQIRRRSSFGQNAEANSKTNAKEQTQHFQHGYRRRHAANGNEKI----SANFI 543
           QH+E+ QR+    +   +NA+    T     + +F H    R ++  N  +    S +F 
Sbjct: 499 QHEEQTQRRSSELALGSRNADGQHLTKDVPDSHNFPHRKNSRDSSKANGSVEPEASLDFE 558

Query: 542 QPKP 531
            PKP
Sbjct: 559 GPKP 562


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,905,473
Number of Sequences: 37544
Number of extensions: 371859
Number of successful extensions: 935
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)