Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14k24
         (758 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U44103-1|AAC51200.1|  201|Homo sapiens small GTP binding protein...    30   7.9  
CR450362-1|CAG29358.1|  201|Homo sapiens RAB9A protein.                30   7.9  
BC017265-1|AAH17265.1|  201|Homo sapiens RAB9A, member RAS oncog...    30   7.9  
AF498944-1|AAM21092.1|  201|Homo sapiens small GTP binding prote...    30   7.9  

>U44103-1|AAC51200.1|  201|Homo sapiens small GTP binding protein
           Rab9 protein.
          Length = 201

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 3/114 (2%)
 Frame = -2

Query: 511 NRDMNSYFDLSQAYKL---HLYVDLNTVIMFITMPLLKSTTVPFNLYRAMTLPFCRGTMC 341
           NR + + FD    + +    L  DL     F+TM +    T     +R++  PF RG+ C
Sbjct: 25  NRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWD--TAGQERFRSLRTPFYRGSDC 82

Query: 340 LLIISGNEYFGITDSKNYYVPVSDNFRQDCQEFTGYNEFLCPETEPIATMNSKV 179
            L+      F + DS+++      N     +EF  Y +   PE+ P   + +K+
Sbjct: 83  CLLT-----FSVDDSQSF-----QNLSNWKKEFIYYADVKEPESFPFVILGNKI 126


>CR450362-1|CAG29358.1|  201|Homo sapiens RAB9A protein.
          Length = 201

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 3/114 (2%)
 Frame = -2

Query: 511 NRDMNSYFDLSQAYKL---HLYVDLNTVIMFITMPLLKSTTVPFNLYRAMTLPFCRGTMC 341
           NR + + FD    + +    L  DL     F+TM +    T     +R++  PF RG+ C
Sbjct: 25  NRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWD--TAGQERFRSLRTPFYRGSDC 82

Query: 340 LLIISGNEYFGITDSKNYYVPVSDNFRQDCQEFTGYNEFLCPETEPIATMNSKV 179
            L+      F + DS+++      N     +EF  Y +   PE+ P   + +K+
Sbjct: 83  CLLT-----FSVDDSQSF-----QNLSNWKKEFIYYADVKEPESFPFVILGNKI 126


>BC017265-1|AAH17265.1|  201|Homo sapiens RAB9A, member RAS oncogene
           family protein.
          Length = 201

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 3/114 (2%)
 Frame = -2

Query: 511 NRDMNSYFDLSQAYKL---HLYVDLNTVIMFITMPLLKSTTVPFNLYRAMTLPFCRGTMC 341
           NR + + FD    + +    L  DL     F+TM +    T     +R++  PF RG+ C
Sbjct: 25  NRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWD--TAGQERFRSLRTPFYRGSDC 82

Query: 340 LLIISGNEYFGITDSKNYYVPVSDNFRQDCQEFTGYNEFLCPETEPIATMNSKV 179
            L+      F + DS+++      N     +EF  Y +   PE+ P   + +K+
Sbjct: 83  CLLT-----FSVDDSQSF-----QNLSNWKKEFIYYADVKEPESFPFVILGNKI 126


>AF498944-1|AAM21092.1|  201|Homo sapiens small GTP binding protein
           RAB9 protein.
          Length = 201

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 3/114 (2%)
 Frame = -2

Query: 511 NRDMNSYFDLSQAYKL---HLYVDLNTVIMFITMPLLKSTTVPFNLYRAMTLPFCRGTMC 341
           NR + + FD    + +    L  DL     F+TM +    T     +R++  PF RG+ C
Sbjct: 25  NRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWD--TAGQERFRSLRTPFYRGSDC 82

Query: 340 LLIISGNEYFGITDSKNYYVPVSDNFRQDCQEFTGYNEFLCPETEPIATMNSKV 179
            L+      F + DS+++      N     +EF  Y +   PE+ P   + +K+
Sbjct: 83  CLLT-----FSVDDSQSF-----QNLSNWKKEFIYYADVKEPESFPFVILGNKI 126


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,419,289
Number of Sequences: 237096
Number of extensions: 2088342
Number of successful extensions: 7909
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7909
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9183116696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)