Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14k24
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19158-1|CAA79574.1|  788|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z81047-11|CAB02837.1|  226|Caenorhabditis elegans Hypothetical p...    30   2.1  
AL032663-7|CAA21763.1|  226|Caenorhabditis elegans Hypothetical ...    30   2.1  
AL021491-2|CAA16375.1|  319|Caenorhabditis elegans Hypothetical ...    30   2.1  
Z82075-1|CAB04930.1|  320|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr...    29   4.7  

>Z19158-1|CAA79574.1|  788|Caenorhabditis elegans Hypothetical
           protein T23G5.1 protein.
          Length = 788

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/57 (24%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = -2

Query: 625 KNKLNISNTVIDD-DTLLTEMKKLVQILYNQNRMWVVDFNRDMNSYFDLSQAYKLHL 458
           KN+L  +N  I + D + +++K+L + ++  ++  +++   D  +Y D SQ+  +H+
Sbjct: 662 KNRLIANNGSIQNIDGIPSDIKELYRTVWEISQKDIIEMAADRGAYIDQSQSLNIHM 718


>Z81047-11|CAB02837.1|  226|Caenorhabditis elegans Hypothetical
           protein C41G6.13 protein.
          Length = 226

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 674 RSSFGQNAEANSKTNAKEQTQHFQHGYRRRHAANG 570
           R++F    E+ +KT A E+  HF H    RHA  G
Sbjct: 62  RNTFAPLKESVTKTPADEEAAHFTHRPPYRHATKG 96


>AL032663-7|CAA21763.1|  226|Caenorhabditis elegans Hypothetical
           protein Y75B12B.8 protein.
          Length = 226

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 674 RSSFGQNAEANSKTNAKEQTQHFQHGYRRRHAANG 570
           R++F    E+ +KT A E+  HF H    RHA  G
Sbjct: 62  RNTFAPLKESVTKTPADEEAAHFTHRPPYRHATKG 96


>AL021491-2|CAA16375.1|  319|Caenorhabditis elegans Hypothetical
           protein Y44A6B.3 protein.
          Length = 319

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 171 ISHTFEFIVAIGSVSGHKNSL*PVNSWQSCLKL 269
           I+   + ++  G +SG+  S   +NSW+ CLK+
Sbjct: 17  ITAELKLMIVYGQISGNTTSRFILNSWEDCLKI 49


>Z82075-1|CAB04930.1|  320|Caenorhabditis elegans Hypothetical
           protein W07A8.1 protein.
          Length = 320

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/92 (18%), Positives = 39/92 (42%)
 Frame = -2

Query: 643 IVKQTRKNKLNISNTVIDDDTLLTEMKKLVQILYNQNRMWVVDFNRDMNSYFDLSQAYKL 464
           + K   ++++   N +I     +     + +ILY Q R++   FN     +  ++ + +L
Sbjct: 216 LAKSISESQIKRENALIRQAMFIGAYLSIYEILYLQIRLYPESFNSAPFEFQTITYSLRL 275

Query: 463 HLYVDLNTVIMFITMPLLKSTTVPFNLYRAMT 368
                LN  + F+     ++  + F  Y+  T
Sbjct: 276 LAVGSLNFCVYFVLTKSTRAMVLKFLGYKTQT 307


>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
           protein M110.4b protein.
          Length = 1155

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -1

Query: 632 NAKEQTQHFQHGYRRRHAANGNEKISANFIQPK 534
           N+ ++ +  QH  ++R AA  N K++++ +QPK
Sbjct: 809 NSLDRNRGMQHPEQKRAAAAANTKLASSSVQPK 841


>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
           protein M110.4a protein.
          Length = 1156

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -1

Query: 632 NAKEQTQHFQHGYRRRHAANGNEKISANFIQPK 534
           N+ ++ +  QH  ++R AA  N K++++ +QPK
Sbjct: 810 NSLDRNRGMQHPEQKRAAAAANTKLASSSVQPK 842


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,019,612
Number of Sequences: 27780
Number of extensions: 359111
Number of successful extensions: 1058
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)