Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14k21
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406...    30   1.3  
12_01_0318 - 2425178-2425267,2425830-2426008,2426594-2426654,242...    29   2.3  
07_03_0006 + 12268852-12269146,12269362-12269487,12269536-122697...    29   4.1  
12_02_0942 - 24653834-24654046,24654346-24654482,24654626-246549...    28   5.4  
10_01_0021 - 281130-281224,281758-281842,281916-281971,282408-28...    28   7.1  
02_05_0680 - 30824652-30826010                                         28   7.1  
04_01_0248 + 3254493-3254599,3258414-3258681,3260797-3261074,326...    27   9.4  

>08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,
            4066416-4066933,4067435-4067694,4068089-4068594,
            4068667-4071319
          Length = 2107

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = -1

Query: 577  VANXDLAEANRSLILFANEMIVARRDAETARQDCENA---RRETAQLANRMADIAQDVIA 407
            +A+  L EAN      +N  + +  D     + C NA     E   L  ++A+  Q +IA
Sbjct: 1817 IASGLLEEANLFAPSLSNAYLPSEHDENHIEEKCSNATLLEDEDTYLRQKLANNVQKIIA 1876

Query: 406  KPSNPQLC 383
            K S   LC
Sbjct: 1877 KGSANNLC 1884


>12_01_0318 -
           2425178-2425267,2425830-2426008,2426594-2426654,
           2426851-2427160,2428514-2428777,2432595-2433865
          Length = 724

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 536 FVCQRNDCGSTRR*NGSARLRKRAP 462
           FVC R  C   RR  G ARLR+ +P
Sbjct: 430 FVCSRLACALLRRRRGRARLRRASP 454


>07_03_0006 +
           12268852-12269146,12269362-12269487,12269536-12269753,
           12269918-12270292,12270376-12270610,12270698-12270861
          Length = 470

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
 Frame = -1

Query: 370 VCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVLNKVKEAIPR------ 209
           V D GNN F  + P K  L R ++    N     +       +V N++K AIP+      
Sbjct: 285 VYDNGNNTFRTIFPSKVELQRMVEWGQVNTKFVKAKMEMKERDVGNEIKYAIPKIVDMKL 344

Query: 208 -NKFKAKHNRITLLEDYTREELMNVI 134
             ++ A H ++ +L+     E ++VI
Sbjct: 345 TKRYDAAHLQVLVLDHSLIPESVDVI 370


>12_02_0942 -
           24653834-24654046,24654346-24654482,24654626-24654959,
           24655067-24655153,24655254-24655580
          Length = 365

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/62 (22%), Positives = 28/62 (45%)
 Frame = -1

Query: 448 LANRMADIAQDVIAKPSNPQLCHSXAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFS 269
           L ++M++++   +    N   C+S  V D+ NN  +  RP + S    +    + D +  
Sbjct: 280 LESKMSNLSPSCLIDKENVHACYSMMVGDMNNNRRSSKRPLQCSDSNEITTTSTYDSVLV 339

Query: 268 SD 263
            D
Sbjct: 340 DD 341


>10_01_0021 -
           281130-281224,281758-281842,281916-281971,282408-282584,
           282686-282805,283004-283096,283548-283668,283772-283804,
           284001-284082,286600-286739
          Length = 333

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 214 PRNKFKAKHNRITLLEDYTREELMNVIGSTMTDRQIARM 98
           P N  +  HNR ++L++     L N  G   T RQ+  M
Sbjct: 99  PPNAIQHLHNRQSMLQEVADLNLSNAYGEVCTPRQLVIM 137


>02_05_0680 - 30824652-30826010
          Length = 452

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 478 CENARRETAQLANRMADIAQDVIAKPSNPQ 389
           C+N   E    AN M D   +++AKP +PQ
Sbjct: 257 CDNQCLEAMSKANAMYDALVNLVAKPVSPQ 286


>04_01_0248 +
           3254493-3254599,3258414-3258681,3260797-3261074,
           3261708-3261711,3263037-3263118,3263196-3263220,
           3263498-3263599,3264123-3264306,3264902-3265068,
           3265233-3265866
          Length = 616

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 367 CDVGNNEFAFLRPQKRSLGRSLKRLGSND 281
           C V    F +L P  + LGR  K+LG  D
Sbjct: 341 CSVLTPCFTYLNPTNKQLGRLFKKLGYGD 369


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,861,270
Number of Sequences: 37544
Number of extensions: 299624
Number of successful extensions: 995
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)