Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14k21
(634 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical ... 29 2.1
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z37139-3|CAA85492.2| 793|Caenorhabditis elegans Hypothetical pr... 29 3.7
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 29 3.7
Z78018-2|CAB01447.1| 434|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr... 28 4.8
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch... 28 4.8
AF026215-4|AAB71322.1| 843|Caenorhabditis elegans Hypothetical ... 28 4.8
Z75546-7|CAA99895.1| 566|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z83241-3|CAB05818.1| 422|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z81120-9|CAB03349.1| 422|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z81056-2|CAB02901.2| 323|Caenorhabditis elegans Hypothetical pr... 27 8.4
>AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical
protein F52C12.4 protein.
Length = 1635
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 303 RLRPSDRFCGRRNANSLLPTSHTAXLWHSCG 395
RL+PS CG RN L P + A ++ S G
Sbjct: 53 RLKPSSEECGLRNTQPLAPITDIAVIFPSLG 83
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -1
Query: 589 KNXTVANXDLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIAQ 419
KN N AE R I +M + R+D + NA +E QLA+ + D A+
Sbjct: 2032 KNEMTINIAQAENARERITMLRQMALQRKDKLPKFNEEWNAMQELIQLADALVDEAE 2088
Score = 27.5 bits (58), Expect = 8.4
Identities = 28/141 (19%), Positives = 61/141 (43%), Gaps = 2/141 (1%)
Frame = -1
Query: 565 DLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIA--QDVIAKPSNP 392
+LAE L NE+ + + +D + AR ET Q++ R+ ++ D + +
Sbjct: 2934 NLAECQLHLTSSENEIETMKAVEKIHLEDLKIAREETDQISKRIDEVRLFVDDVNDAAAR 2993
Query: 391 QLCHSXAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVLNKVKEAIP 212
L + + + + + +L R+++ + +SD+ P S + LN+ +P
Sbjct: 2994 LLAEDLKLDEHAKGQIEHVNKRYSTLKRAIRIRQAAVRNAASDFGPTSEHFLNQ-SVTLP 3052
Query: 211 RNKFKAKHNRITLLEDYTREE 149
+ +K N + + T E+
Sbjct: 3053 WQRAISKSNLLPYYIEQTSEK 3073
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -1
Query: 589 KNXTVANXDLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIAQ 419
KN N AE R I +M + R+D + NA +E QLA+ + D A+
Sbjct: 2032 KNEMTINIAQAENARERITMLRQMALQRKDKLPKFNEEWNAMQELIQLADALVDEAE 2088
Score = 27.5 bits (58), Expect = 8.4
Identities = 28/141 (19%), Positives = 61/141 (43%), Gaps = 2/141 (1%)
Frame = -1
Query: 565 DLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIA--QDVIAKPSNP 392
+LAE L NE+ + + +D + AR ET Q++ R+ ++ D + +
Sbjct: 2934 NLAECQLHLTSSENEIETMKAVEKIHLEDLKIAREETDQISKRIDEVRLFVDDVNDAAAR 2993
Query: 391 QLCHSXAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVLNKVKEAIP 212
L + + + + + +L R+++ + +SD+ P S + LN+ +P
Sbjct: 2994 LLAEDLKLDEHAKGQIEHVNKRYSTLKRAIRIRQAAVRNAASDFGPTSEHFLNQ-SVTLP 3052
Query: 211 RNKFKAKHNRITLLEDYTREE 149
+ +K N + + T E+
Sbjct: 3053 WQRAISKSNLLPYYIEQTSEK 3073
>Z37139-3|CAA85492.2| 793|Caenorhabditis elegans Hypothetical
protein C14B1.6 protein.
Length = 793
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = -1
Query: 208 NKFKAKHNRITLLEDYTREELMNVIGSTMTDRQIARMNSLRNAQ*KFLYVVK 53
N + + LL YT EEL+ V G + D QIA +R VVK
Sbjct: 523 NYDQKRRQNFGLLRYYTLEELIEVFGLLLPDVQIAMRRGVRRENMPVSTVVK 574
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -1
Query: 589 KNXTVANXDLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIAQ 419
KN N AE R I +M + R+D + NA +E QLA+ + D A+
Sbjct: 2032 KNEMTINIAQAENARERITMLRQMALQRKDKLPKFNEEWNAMQELIQLADALVDEAE 2088
Score = 27.5 bits (58), Expect = 8.4
Identities = 28/141 (19%), Positives = 61/141 (43%), Gaps = 2/141 (1%)
Frame = -1
Query: 565 DLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIA--QDVIAKPSNP 392
+LAE L NE+ + + +D + AR ET Q++ R+ ++ D + +
Sbjct: 2934 NLAECQLHLTSSENEIETMKAVEKIHLEDLKIAREETDQISKRIDEVRLFVDDVNDAAAR 2993
Query: 391 QLCHSXAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVLNKVKEAIP 212
L + + + + + +L R+++ + +SD+ P S + LN+ +P
Sbjct: 2994 LLAEDLKLDEHAKGQIEHVNKRYSTLKRAIRIRQAAVRNAASDFGPTSEHFLNQ-SVTLP 3052
Query: 211 RNKFKAKHNRITLLEDYTREE 149
+ +K N + + T E+
Sbjct: 3053 WQRAISKSNLLPYYIEQTSEK 3073
>Z78018-2|CAB01447.1| 434|Caenorhabditis elegans Hypothetical
protein W07G4.2 protein.
Length = 434
Score = 28.3 bits (60), Expect = 4.8
Identities = 27/87 (31%), Positives = 37/87 (42%)
Frame = -1
Query: 472 NARRETAQLANRMADIAQDVIAKPSNPQLCHSXAVCDVGNNEFAFLRPQKRSLGRSLKRL 293
N R T ++ VI S+ C A +GN+ F LG S ++L
Sbjct: 45 NDRNSTTNTLTSYENVQNSVICNFSDIN-CRLAAGMRLGNHIFEMAA----LLGMS-RQL 98
Query: 292 GSNDVIFSSDYVPNSMNVLNKVKEAIP 212
+ F D +N+LNKVKEAIP
Sbjct: 99 HRKSLFFVED--KTYLNMLNKVKEAIP 123
>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -1
Query: 553 ANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIAQDV 413
ANR + F+NE+ A+R AE ++ +N + LA + + + +
Sbjct: 1317 ANRLKLQFSNELDHAKRQAEEESRERQNLSNLSKNLARELEQLKESI 1363
>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -1
Query: 553 ANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIAQDV 413
ANR + F+NE+ A+R AE ++ +N + LA + + + +
Sbjct: 1317 ANRLKLQFSNELDHAKRQAEEESRERQNLSNLSKNLARELEQLKESI 1363
>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain 2
protein.
Length = 1947
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -1
Query: 553 ANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIAQDV 413
ANR + F+NE+ A+R AE ++ +N + LA + + + +
Sbjct: 1317 ANRLKLQFSNELDHAKRQAEEESRERQNLSNLSKNLARELEQLKESI 1363
>AF026215-4|AAB71322.1| 843|Caenorhabditis elegans Hypothetical
protein F09G2.4 protein.
Length = 843
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/41 (48%), Positives = 22/41 (53%)
Frame = -1
Query: 511 ARRDAETARQDCENARRETAQLANRMADIAQDVIAKPSNPQ 389
A RDAE R E ARR+ AQ AN D D IA P P+
Sbjct: 410 AERDAEETRLRMERARRQ-AQ-ANESDDSDDDDIAAPIVPR 448
>Z75546-7|CAA99895.1| 566|Caenorhabditis elegans Hypothetical
protein R05D11.8 protein.
Length = 566
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -1
Query: 373 AVCDVGNNEFAFLRPQKRSLGRSLKRLGSN-DVIFSSDYVPNSMNVLNKVKEAIP 212
+V D N + PQK + GRS K+ +N + +F P+ + + K P
Sbjct: 111 SVPDSSRNRSVAVSPQKSAKGRSPKKFATNVEKLFEHHSTPSKLTLAKKQSRQSP 165
>Z83241-3|CAB05818.1| 422|Caenorhabditis elegans Hypothetical
protein T12D8.8 protein.
Length = 422
Score = 27.5 bits (58), Expect = 8.4
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -3
Query: 623 NDVIAK-IDDLTQKLXGGQXRFGGSQPIAHFVCQRNDCGS-TRR*NGSARLRKRAPR 459
N +AK I L K G FGG+ P A C+ DCG G A + ++ PR
Sbjct: 358 NPKVAKLISKLQSKGAGMPGMFGGAPPSAGGGCEDADCGGPCPGARGGASVPQQPPR 414
>Z81120-9|CAB03349.1| 422|Caenorhabditis elegans Hypothetical
protein T12D8.8 protein.
Length = 422
Score = 27.5 bits (58), Expect = 8.4
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -3
Query: 623 NDVIAK-IDDLTQKLXGGQXRFGGSQPIAHFVCQRNDCGS-TRR*NGSARLRKRAPR 459
N +AK I L K G FGG+ P A C+ DCG G A + ++ PR
Sbjct: 358 NPKVAKLISKLQSKGAGMPGMFGGAPPSAGGGCEDADCGGPCPGARGGASVPQQPPR 414
>Z81056-2|CAB02901.2| 323|Caenorhabditis elegans Hypothetical
protein F09F3.2 protein.
Length = 323
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 396 LLGLAITSCAMSAMRLASCAVSRRAFSQSCRAV 494
L+G+ IT+CA+SA+ + A+S + C +
Sbjct: 131 LIGIPITTCAISAVLFITLAISVLSLIAGCSCI 163
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,206,880
Number of Sequences: 27780
Number of extensions: 242687
Number of successful extensions: 686
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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