Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14k20
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    48   1e-06
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    27   1.7  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   1.7  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    27   2.2  
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    26   3.8  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   5.1  
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch...    25   6.7  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    25   8.9  

>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 28/102 (27%), Positives = 46/102 (45%)
 Frame = -3

Query: 617 RYDVIPEXWEXHNIAXYIDPDIFXXXXXXXXXXXXXXAGGMYAAPKIELDDTVREIRELA 438
           +YD +PE  +  N+A ++DP+I                 G Y + +   D    E+ E A
Sbjct: 428 KYDRMPELLDGKNVADFVDPEIEAKLLALDEEEERLEREGYYDSDQEIEDADEEEVLEKA 487

Query: 437 RQIRNKKAILKDESRLVKQSTKPVMPRTSRAKTKQRSTSKLR 312
            +IR K  +    +R  K   +PV+PRT+  +T     S L+
Sbjct: 488 SRIREKNKLTMLAARQKKIKNRPVLPRTAGIRTLDELQSSLQ 529



 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 107 KMGLKGEADRFIGTKMPKHLFAGK 36
           +M    E+DR +    PKHL +GK
Sbjct: 610 RMARASESDRHVIAAKPKHLLSGK 633


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 401 ESRLVKQSTKPVMPRTSRAKTKQRSTSKLRKDMEKL 294
           +S++   S KP +PRTS + +   S + LRK   +L
Sbjct: 147 QSKVTTASLKPNIPRTSMSSSPTASRTSLRKGAGEL 182


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
 Frame = -3

Query: 443 LARQIRNKKA----ILKDESRLVKQSTKPVMPRTSRAKT---KQRSTSKLRKDMEKLGVD 285
           L +  ++KKA    +  D S+     TK   P+ S+ KT   +Q + S   +  EKL  D
Sbjct: 528 LTKASKSKKAKASKLANDTSKNANGETKST-PKKSKKKTSKAQQEANSTTAEGKEKLSGD 586

Query: 284 MSETGDA 264
            +ETG++
Sbjct: 587 STETGNS 593


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -3

Query: 479 IELDDTVREIRELARQIRNKKAILKDESRLVKQSTKPVM-PRTSRAKTKQRSTSKL 315
           I LDD++    +   + RN+      +  LV  S K    P+TS   TK R+ SKL
Sbjct: 139 IILDDSLHTNSKKLGKTRNEVKEESQKRELVSNSIKEATSPKTSSILTKPRNPSKL 194


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 476 ELDDTVREIRELARQIRNKKAILKDESRLVKQSTKPVMP 360
           +LD+   E+ ELA ++ +   ++   S L  QS   ++P
Sbjct: 147 DLDEVPTELNELANEVVDVDDVVSPSSELNAQSVNNILP 185


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 18/46 (39%), Positives = 18/46 (39%)
 Frame = -2

Query: 603 PGDXGGTQHRRXYRPGHL**XGRVGEGRGTARGWRHVRRAQDRAGR 466
           PG  GG    R  R G     G  G GRG ARG         R GR
Sbjct: 5   PGSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGR 50


>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 271 PVSDMSTPSFSMSFLSLEVDLCLVLAREVRGITGFVDCF 387
           P+   STP   +S LS ++DL    A +  G+T F D F
Sbjct: 144 PLEIYSTP---VSVLSSQIDLLRRFATDSDGLTPFTDVF 179


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 268 SPVSDMSTPSFSMSFLSLEVDLCLVLAREVRG 363
           S VS+M  PSFS    +L +  CLV   +  G
Sbjct: 189 SEVSNMDNPSFSKGLHTLHLLECLVDINQASG 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,903,810
Number of Sequences: 5004
Number of extensions: 29746
Number of successful extensions: 95
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)