Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14k20
(625 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0075 - 558829-560859 57 1e-08
06_01_0668 - 4882174-4884204 56 2e-08
11_06_0658 - 25963719-25963931,25964016-25964468 36 0.035
01_05_0619 - 23737178-23737378,23737460-23737516,23737597-237377... 35 0.060
07_03_0161 - 14560287-14560426,14560467-14560707 34 0.080
09_04_0682 - 19429007-19429426 33 0.24
12_02_0298 + 17041206-17041712 32 0.32
01_06_0464 + 29571791-29572240 32 0.32
06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229 30 1.3
09_06_0354 - 22490833-22491417 30 1.7
05_03_0356 + 12894195-12894237,12894347-12894484,12894868-128950... 30 1.7
06_03_1392 - 29842084-29842176,29842743-29842817,29842906-298429... 29 2.3
04_04_1513 - 34107700-34107765,34108475-34108551,34108640-341086... 29 2.3
12_02_1164 + 26620779-26621087 29 3.0
07_03_0710 - 20873420-20874745 29 3.0
11_01_0404 + 3071412-3071464,3073572-3074970 29 4.0
10_01_0263 - 2759479-2759534,2761002-2761299,2761382-2762134 29 4.0
06_02_0355 + 15108541-15108589,15108928-15109301,15109947-15110198 29 4.0
12_02_0759 - 22882435-22882731 28 5.2
12_01_0843 + 7891622-7892524 28 5.2
04_04_0900 + 29232365-29232931 28 5.2
01_01_0601 - 4476261-4476728 28 5.2
11_06_0232 + 21559467-21559532,21559586-21560200 28 6.9
11_04_0081 - 13320073-13320639 28 6.9
10_08_0298 - 16603417-16603775,16604015-16604203,16604420-166045... 28 6.9
03_06_0199 + 32310272-32311432 28 6.9
02_02_0415 - 9981345-9981440,9981716-9981784,9982035-9982155,998... 28 6.9
10_08_0614 - 19238064-19238132,19238381-19238407,19238436-192385... 27 9.2
10_01_0144 - 1705429-1706250 27 9.2
09_02_0502 + 9970516-9971028 27 9.2
09_01_0075 - 1093514-1093768,1093988-1094127,1094129-1094174 27 9.2
05_06_0005 + 24802843-24803101,24804086-24804333,24804417-248045... 27 9.2
04_04_1098 + 30876785-30876835,30876846-30877171,30877396-308774... 27 9.2
04_04_0054 + 22400278-22400420,22400545-22401037 27 9.2
02_05_0604 - 30299794-30300041,30300094-30300157 27 9.2
02_03_0227 + 16601538-16601908,16603197-16603378,16603495-166035... 27 9.2
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815... 27 9.2
>07_01_0075 - 558829-560859
Length = 676
Score = 56.8 bits (131), Expect = 1e-08
Identities = 58/223 (26%), Positives = 88/223 (39%), Gaps = 31/223 (13%)
Frame = -3
Query: 611 DVIPEXWEXHNIAXYIDPDIFXXXXXXXXXXXXXXAG-GMYAAPKIELDDTVREIRELAR 435
D++PE + HN+A ++DPDI A +I+ + E RE+
Sbjct: 446 DILPEILDGHNVADFLDPDILQRCEELEREEGLRLEEEAAQEAFQIDGHELTEEQREILG 505
Query: 434 QIRNKKAILKDESRLVKQS--TKPVMPRT-----------------------SRAKTKQR 330
QIR KKA+L E R+ K++ ++P++PR S A + R
Sbjct: 506 QIRKKKALLIQEHRMKKRTAESRPIVPRKFDKDRTFTTDRMGRQLSSMGFDPSAAMDRAR 565
Query: 329 STSKLRKDMEKLGVDMSETGDAHFTXXXXXXXXXXXXXXXXXXXREPSNQPVA-----DP 165
S S+ RK L S+ D P + V D
Sbjct: 566 SRSRGRKRERSLSRAASDGDDMDIDGQQSSKKLRALSRSRSRSKSRPPEEVVPGEGFKDS 625
Query: 164 IMRVKVKRMAHAAIAKKTKKMGLKGEADRFIGTKMPKHLFAGK 36
+ K + A ++ + K+ +GEADR I T PKHLF+GK
Sbjct: 626 AQKKKAIKKAKDSVRNRNKE-ARRGEADRVIPTLKPKHLFSGK 667
>06_01_0668 - 4882174-4884204
Length = 676
Score = 56.4 bits (130), Expect = 2e-08
Identities = 59/223 (26%), Positives = 90/223 (40%), Gaps = 31/223 (13%)
Frame = -3
Query: 611 DVIPEXWEXHNIAXYIDPDIFXXXXXXXXXXXXXXAG-GMYAAPKIELDDTVREIRELAR 435
D++PE + HN+A ++DPDI A +I+ + E RE+
Sbjct: 446 DILPEILDGHNVADFLDPDILQRCEELEREEGLRLEEEAAQEAFQIDGHELTEEQREILG 505
Query: 434 QIRNKKAILKDESRLVKQS--TKPVMPR---------TSR--------------AKTKQR 330
QIR KKA+L E R+ K++ ++P++PR T+R A + R
Sbjct: 506 QIRKKKALLIQEHRMKKRTAESRPIVPRKFDKDRTFTTNRMGRQLSSMGFDPRAALDRAR 565
Query: 329 STSKLRKDMEKLGVDMSETGDAHFTXXXXXXXXXXXXXXXXXXXREPSNQPVA-----DP 165
S S+ RK L S+ D P + V D
Sbjct: 566 SRSRGRKRERSLSRAASDGDDMDIDGQQSSKKLRALSRSRSRSKSRPPEEVVPGEGFKDS 625
Query: 164 IMRVKVKRMAHAAIAKKTKKMGLKGEADRFIGTKMPKHLFAGK 36
+ K + A ++ + K+ +GEADR I T PKHLF+GK
Sbjct: 626 AQKKKAIKKAKDSVRNRNKE-ARRGEADRVIPTLKPKHLFSGK 667
>11_06_0658 - 25963719-25963931,25964016-25964468
Length = 221
Score = 35.5 bits (78), Expect = 0.035
Identities = 23/72 (31%), Positives = 32/72 (44%)
Frame = -2
Query: 591 GGTQHRRXYRPGHL**XGRVGEGRGTARGWRHVRRAQDRAGRHREGDQGTGPADTQQEGH 412
GG HRR P + G+ G +G G +H + + G+ R+G + GP Q
Sbjct: 141 GGGDHRRTNNPREIN-AGKSGN-KGNKGGQQHKQNG-GKGGKRRKGKKAAGPPPQPQPCT 197
Query: 411 PQGRVSPGEAVH 376
P G V P VH
Sbjct: 198 PTGAVFPYYLVH 209
>01_05_0619 -
23737178-23737378,23737460-23737516,23737597-23737755,
23739477-23739621,23739725-23740136,23740693-23740855
Length = 378
Score = 34.7 bits (76), Expect = 0.060
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = -2
Query: 471 GRHREGDQGTGPADTQQEGHPQGRVSPGEAVHEAGDAAHLASQDQAEV---HLQAQEGHG 301
G HR ++G GP + G +G + GEA E+G A H A + ++ + +EG G
Sbjct: 119 GEHRPSERGHGPRQPYRGGGRRGGYTGGEAGDESGRAPHRAYERRSGTGRGYGMKREGAG 178
Query: 300 ETRRGHVGD 274
G V D
Sbjct: 179 RGNWGTVTD 187
>07_03_0161 - 14560287-14560426,14560467-14560707
Length = 126
Score = 34.3 bits (75), Expect = 0.080
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +2
Query: 353 RCAASPASWT-ASPGET-RP*GWPSCCVSAG 439
RC A W A+PG T P GWP CC +AG
Sbjct: 7 RCPALAVQWNRAAPGATVPPAGWPRCCGAAG 37
>09_04_0682 - 19429007-19429426
Length = 139
Score = 32.7 bits (71), Expect = 0.24
Identities = 22/61 (36%), Positives = 26/61 (42%)
Frame = -2
Query: 540 GRVGEGRGTARGWRHVRRAQDRAGRHREGDQGTGPADTQQEGHPQGRVSPGEAVHEAGDA 361
G G GTA W RRA +RAG R G T ++ Q GEA G+A
Sbjct: 29 GERASGGGTA--WPMTRRAHERAGGRRSGGDQQADGRTSEKADDQS-WRRGEAAARRGEA 85
Query: 360 A 358
A
Sbjct: 86 A 86
>12_02_0298 + 17041206-17041712
Length = 168
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 541 WQSWRRTRNCARLAACTPRPRS 476
W SW +NCA AA +P PRS
Sbjct: 42 WSSWPSAKNCATTAAPSPAPRS 63
>01_06_0464 + 29571791-29572240
Length = 149
Score = 32.3 bits (70), Expect = 0.32
Identities = 22/59 (37%), Positives = 27/59 (45%)
Frame = -2
Query: 537 RVGEGRGTARGWRHVRRAQDRAGRHREGDQGTGPADTQQEGHPQGRVSPGEAVHEAGDA 361
R G G RG RR + RAG R G++GTG A G +G S H G+A
Sbjct: 60 RCYRGGGELRGLH--RRVRHRAGLLRAGEEGTGGA-VPGVGRRRGSTSAASRPHGGGEA 115
>06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229
Length = 212
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = +2
Query: 497 CRQPRAVPRPSPTLPXYQRCPGRYXRRCCVPPXSPG*R 610
C + R PRP L PG RR PP PG R
Sbjct: 144 CHRARPPPRPGGRLVPVAASPGSPGRRLAQPPPRPGGR 181
>09_06_0354 - 22490833-22491417
Length = 194
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -3
Query: 437 RQIRNKKAILKDESRLVKQSTKPVMPRTSRAKTKQRSTSKLRKDMEKLGVDMSET 273
++ NKK K+ + LVK TK V T+ A+ + T ++ D K G ET
Sbjct: 6 KEAANKKKKKKEVAVLVKTKTKVVQLTTTTAELELEPTVTVQVDDNKTGAAADET 60
>05_03_0356 +
12894195-12894237,12894347-12894484,12894868-12895018,
12895399-12895526,12895704-12895840,12896742-12896847,
12898659-12898762,12899159-12899281,12899620-12899700,
12900159-12900304,12902171-12902243,12902970-12903060,
12904978-12905018,12906079-12906153,12906402-12906569,
12907638-12907676,12907759-12907847,12908014-12908078,
12908794-12908840,12908924-12908983,12909168-12909239,
12910143-12910172,12910526-12910617,12910719-12910802,
12911941-12912046,12912171-12912233,12912776-12912870,
12913000-12913180
Length = 875
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = -2
Query: 174 GRPHHARESKEDGPRGHRQEDQEDGPQGRGGPVHRHQDAEASVRWKXVGSARRTP 10
G+P A S PRGH++ + P G+GG ++ VG A +P
Sbjct: 2 GKPKPA--SATAAPRGHKRRPKRTRPSGKGGGPEPREEKRKRRELDGVGLAEESP 54
>06_03_1392 -
29842084-29842176,29842743-29842817,29842906-29842998,
29843125-29843145,29843537-29843616,29843768-29843856,
29844034-29844071,29844168-29844261,29844548-29844640,
29844929-29845002
Length = 249
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 458 REIRELARQIRNKKAILKDESRLVKQSTKPVMPRTSR 348
R++ EL ++R+ K ++KD R+VK P T+R
Sbjct: 42 RQLEELTDKMRDCKRLIKDFERVVKDMAGSTDPETAR 78
>04_04_1513 -
34107700-34107765,34108475-34108551,34108640-34108688,
34109144-34109218,34109447-34109554,34109728-34109835,
34110708-34111256
Length = 343
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +2
Query: 527 SPTLPXYQRCPGRYXRRCCVPPXSPG*RHSARP 625
SP P +QRCP RR PP G R S P
Sbjct: 68 SPANPPWQRCPPPPRRRFRSPPARDGRRSSRAP 100
>12_02_1164 + 26620779-26621087
Length = 102
Score = 29.1 bits (62), Expect = 3.0
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = -2
Query: 492 RRAQDRAGRHREGDQGTGPADTQQEGHPQGRVSPGEAVHEAGDAAHLASQDQ-AEVHLQA 316
R A GR E DQG +E H G V+ + GDAA ++Q V +
Sbjct: 15 RYASGPRGRCGEEDQGGDVVGRHEEVHGDGGVAGCGEEEQGGDAAGHGEEEQGGGVARRR 74
Query: 315 QEGHG 301
+E HG
Sbjct: 75 EEVHG 79
>07_03_0710 - 20873420-20874745
Length = 441
Score = 29.1 bits (62), Expect = 3.0
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = -2
Query: 528 EGRGTARGWRHVRRAQDRAGRHREGDQGT--GPADTQQEGHPQGRVSPGEAVHEAGDAAH 355
+ RG G VRRA DR+ R G G GP+ T + G EA A A +
Sbjct: 33 DDRGGYVGAERVRRAADRSHRRVNGFLGAIEGPSSTARLGSDGAGAGGAEASVHASTATY 92
Query: 354 L 352
L
Sbjct: 93 L 93
>11_01_0404 + 3071412-3071464,3073572-3074970
Length = 483
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -2
Query: 165 HHARESKEDGPRGHRQEDQEDGPQGRGGPVHRHQDAEASVR 43
HH++ D ED DG +G P HR + ++ V+
Sbjct: 129 HHSKNHGSDEEEHDMNEDAADGKDKKGSPWHRMKWTDSMVK 169
>10_01_0263 - 2759479-2759534,2761002-2761299,2761382-2762134
Length = 368
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 372 AGDAAHLASQDQAEVHLQAQEGHGETRRG 286
AGDA + A D H +A+ G G+ RRG
Sbjct: 213 AGDALYWALDDGRRRHPRARHGQGDPRRG 241
>06_02_0355 + 15108541-15108589,15108928-15109301,15109947-15110198
Length = 224
Score = 28.7 bits (61), Expect = 4.0
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Frame = -2
Query: 474 AGRHREG-DQGTGPADTQQEGHPQGRVSPGEAVHEAGDAAHLASQDQAEVHLQAQE---G 307
AG + EG G P+ Q + VSPG A H + + L D +HL+ E
Sbjct: 113 AGSNEEGGSHGYTPSPVQAKAGASSDVSPGLAAHLSAKRSALERLDGYWLHLRKTEEDLR 172
Query: 306 HGETRRGHVGD 274
H E R V D
Sbjct: 173 HKEDERRVVPD 183
>12_02_0759 - 22882435-22882731
Length = 98
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = -2
Query: 522 RGTARGWRHVRRAQDRAGRHREGDQGTG--PADTQQEGHPQG 403
RG G H R G+ R GD+G G AD +EG G
Sbjct: 35 RGAREGRTHERHHLVERGQRRRGDRGAGVLGADRVEEGPQHG 76
>12_01_0843 + 7891622-7892524
Length = 300
Score = 28.3 bits (60), Expect = 5.2
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 474 AGRHREGDQGTG-PADTQQEGHPQGRVSPGEAVHEAGDAAHLASQDQAEVHLQAQEG 307
+G R GD G G PA + GRV+ A A A+ DQA V L A++G
Sbjct: 181 SGAARAGDDGDGAPAFVSDQW---GRVTWKNAAFHRAVAPDAAAPDQARVALAARDG 234
>04_04_0900 + 29232365-29232931
Length = 188
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/70 (25%), Positives = 28/70 (40%)
Frame = -2
Query: 528 EGRGTARGWRHVRRAQDRAGRHREGDQGTGPADTQQEGHPQGRVSPGEAVHEAGDAAHLA 349
E R WR R + +G G G+G +G +GR + V A + A
Sbjct: 103 EKEAAERQWRRGRGGRRCSGIPASGRSGSGRLGKSMDGRRRGRPAARAEVEAAAERAAEM 162
Query: 348 SQDQAEVHLQ 319
++AE L+
Sbjct: 163 VAERAEERLR 172
>01_01_0601 - 4476261-4476728
Length = 155
Score = 28.3 bits (60), Expect = 5.2
Identities = 31/100 (31%), Positives = 38/100 (38%), Gaps = 1/100 (1%)
Frame = -2
Query: 588 GTQHRRXYRPGHL**XGRVG-EGRGTARGWRHVRRAQDRAGRHREGDQGTGPADTQQEGH 412
G +HR R G G EG G R RR +++ EG G D ++EG
Sbjct: 55 GGRHRERRRAAREAARGNGGSEGEGGGGAHRGARRRREQPA---EGGGGAPQVD-KEEGL 110
Query: 411 PQGRVSPGEAVHEAGDAAHLASQDQAEVHLQAQEGHGETR 292
P A E DAA LA Q + G GE R
Sbjct: 111 PAAEGGDRAADGEERDAAKLAMQ---PMRRSGGRGEGERR 147
>11_06_0232 + 21559467-21559532,21559586-21560200
Length = 226
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -2
Query: 540 GRVGEGRGTARGWRHVRRAQDRA-GRHREGDQGTGPADTQQEGHPQGRVSPGEAVHEAG 367
G VGEG R R + R R RE ++ G A+ + +GH + + +VH G
Sbjct: 71 GDVGEGGPQRRRIASRRHGELRVEARAREREKSRGGAEEEVDGHTCCKSAQAASVHPGG 129
>11_04_0081 - 13320073-13320639
Length = 188
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -2
Query: 540 GRVGEGRGTARGWRHVRRAQDRAGRHREGDQGTGPADTQQEGHPQG 403
GR G+G A GWR + A A R R+ T + +E +G
Sbjct: 130 GRDGDGAAAAMGWRRRQAAMATAAR-RQATMATARGGSGREAAARG 174
>10_08_0298 -
16603417-16603775,16604015-16604203,16604420-16604540,
16604671-16604880
Length = 292
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = -3
Query: 485 PKIELDDTVREIRELARQIRN--KKAILKDESRLVKQSTKPVMP--RTSRAKTKQRSTSK 318
PK+ELDD + E+AR + +KA+L +V+ + P + RA + + ++
Sbjct: 117 PKLELDDAFLQKNEIARAVEEELEKAMLAYGYEIVQTLIVDIEPDEKVKRAMNEINAAAR 176
Query: 317 LR 312
LR
Sbjct: 177 LR 178
>03_06_0199 + 32310272-32311432
Length = 386
Score = 27.9 bits (59), Expect = 6.9
Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
Frame = -2
Query: 537 RVGEGRGTARGWRHVRRAQDRAGRHREGDQGT---GPADTQQEGHP--QGRVSPGEAVHE 373
RV + R W RR + R G G +G P+ Q H + RV
Sbjct: 157 RVRSHQAGRRRWPLRRRRRARVGGVDPGPRGHQDGAPSRRQNHKHMSREPRVPLLRGGIR 216
Query: 372 AGDAAHLASQDQAEVHLQAQEGHGETRR 289
G AAHL + LQ + G GE R
Sbjct: 217 GGSAAHLQDGQKDRADLQDEHGRGEGDR 244
>02_02_0415 -
9981345-9981440,9981716-9981784,9982035-9982155,
9982441-9982622,9983320-9984921
Length = 689
Score = 27.9 bits (59), Expect = 6.9
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Frame = -2
Query: 540 GRVGEGR--GTARGWRHVRRAQDRAGRHREGD---QGTGPADTQQEGHPQGRVSPGEA-V 379
GR G GR G AR WR R G+H D QGT ++ R + GE
Sbjct: 83 GRHGRGRHGGGARPWRRGEDRPARGGQHAADDGEVQGTRRGGDLKQRREGRRWTRGETQA 142
Query: 378 HEAGDAAH 355
E+G A +
Sbjct: 143 RESGKAGN 150
>10_08_0614 -
19238064-19238132,19238381-19238407,19238436-19238510,
19238637-19239317,19239423-19239554,19239676-19239723,
19239828-19239878,19240015-19240134,19241121-19241261,
19241701-19241865,19241981-19242160,19242314-19242445,
19242536-19242643,19242779-19242883,19243217-19243321,
19243407-19243463,19243991-19244010,19244299-19244377,
19245021-19245080,19245562-19245615,19246535-19246600,
19246938-19246990,19247361-19247450,19248152-19248249,
19248348-19248721
Length = 1029
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/80 (25%), Positives = 42/80 (52%)
Frame = -3
Query: 503 GGMYAAPKIELDDTVREIRELARQIRNKKAILKDESRLVKQSTKPVMPRTSRAKTKQRST 324
GG+ A+ +++L + +++ LA +I + LK RL++QS + ++ +R
Sbjct: 583 GGITASDQMDL--LIEQVKMLAGEIAFGTSSLK---RLIEQSIEDPEGTKNQIDNLEREI 637
Query: 323 SKLRKDMEKLGVDMSETGDA 264
+ R+ M L + E+G+A
Sbjct: 638 REKRRHMRALEQKLMESGEA 657
>10_01_0144 - 1705429-1706250
Length = 273
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -2
Query: 579 HRRXYRPGHL**XGRVGEGRGTARGWRHVRRAQDRAGRHREG 454
HRR PG G G+G A GWR RR + G + +G
Sbjct: 188 HRRRLAPGWWGRGG--GDGMEVAMGWRRRRRQRRDGGGNDDG 227
>09_02_0502 + 9970516-9971028
Length = 170
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/58 (31%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Frame = -2
Query: 507 GWRHVRRAQDRAG--RHREGDQGTGPADTQQEGHPQGRVSPGEAVHEAGDAAHLASQD 340
G + R D G RHR+ + A T P V GEA E GD D
Sbjct: 46 GGDRIHRRDDGGGWIRHRDDVEAGSAAATTGRRDPLAAVMTGEANREGGDGGGRVGAD 103
>09_01_0075 - 1093514-1093768,1093988-1094127,1094129-1094174
Length = 146
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -2
Query: 192 TLQPAGGRPHHARESKEDGPRGHRQEDQEDGPQGRGG 82
T P G + R+S RG R+ED G GRGG
Sbjct: 37 TRSPCDGGGNSWRDSGRAARRGAREEDACGGHFGRGG 73
>05_06_0005 + 24802843-24803101,24804086-24804333,24804417-24804572,
24804956-24805114,24805862-24805929,24806044-24806433,
24806515-24806563,24806636-24806788,24807416-24807589,
24808207-24808362,24808705-24808756,24808830-24808988,
24809058-24809094,24809218-24809252,24809349-24809400,
24809614-24809663,24810590-24811924,24812688-24812825,
24812907-24812957,24813081-24814237
Length = 1625
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -2
Query: 531 GEGRGTARGWRHVRRAQDRAGRHREGD-QGTGPADTQQEGHPQGRVSPGEAVHEAGDA 361
G G G RG R + D GR+ +G + +G +D+ G P R S + E GD+
Sbjct: 1039 GRGFGRGRGRGRGRESGDFGGRNDQGSWKNSGTSDS--SGRPSWR-SDSQVEKEVGDS 1093
>04_04_1098 +
30876785-30876835,30876846-30877171,30877396-30877418,
30877687-30879392
Length = 701
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = -3
Query: 458 REIRELARQIRN----KKAILKDESRLVKQSTKPVMPRTSRAKTKQRSTSKLRKDMEK 297
RE R+ ARQ+++ +K +DE R + K R + KQR + K++EK
Sbjct: 618 REDRKSARQLKHDELERKKRSQDEKRKELEKQKQEEERKELDRQKQREEERKAKELEK 675
>04_04_0054 + 22400278-22400420,22400545-22401037
Length = 211
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = -2
Query: 513 ARGWRHVRRAQDRAGRHREGDQGTGPADTQQ-EGHPQGRVSPGEAVHEAGD 364
A GW RRA D AG R + AD + E P R +P + G+
Sbjct: 132 AAGWSASRRAPDTAGLGRPVKKQKAAADDDEGEEAPGARAAPAAKGNNGGN 182
>02_05_0604 - 30299794-30300041,30300094-30300157
Length = 103
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 61 CRSICSLEXRGVGKTDP 11
C++ICSL GVG DP
Sbjct: 65 CKAICSLRYNGVGVCDP 81
>02_03_0227 +
16601538-16601908,16603197-16603378,16603495-16603577,
16604609-16604717,16606754-16606806,16606988-16607023
Length = 277
Score = 27.5 bits (58), Expect = 9.2
Identities = 24/77 (31%), Positives = 30/77 (38%)
Frame = -2
Query: 522 RGTARGWRHVRRAQDRAGRHREGDQGTGPADTQQEGHPQGRVSPGEAVHEAGDAAHLASQ 343
RG A+ W RR R R GD G G G G GE+V G+ A A+
Sbjct: 24 RGAAKRWEARRR------RGRRGDGGAGGGGAAGRGEDGGAGGGGESV--CGEEAMGATA 75
Query: 342 DQAEVHLQAQEGHGETR 292
+A A+ G R
Sbjct: 76 VEARRRCAAKRRWGRRR 92
>01_06_0213 +
27580635-27581105,27581206-27581298,27581376-27581540,
27581640-27581862,27582329-27582429,27582666-27582713,
27583086-27583172,27583745-27583879,27583985-27584140,
27585336-27585545,27585641-27586351,27586429-27586974,
27587872-27588495,27588595-27588699,27590460-27590711,
27590939-27591766
Length = 1584
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = -3
Query: 455 EIRELARQIRNKKAILKDESRLVKQSTKPVMPRTSRAKTKQRSTSKLRKDME 300
E R L + R ++ L+++ R ++ K M + SR KQR +LRK+ E
Sbjct: 208 EERLLRERQREQERFLREQRREHERMEK-FMQKQSRRAEKQRQKEELRKEKE 258
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,997,208
Number of Sequences: 37544
Number of extensions: 292540
Number of successful extensions: 1372
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1369
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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