Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14k20
(625 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036706-9|AAK39281.1| 681|Caenorhabditis elegans Hypothetical ... 81 8e-16
AF036706-10|AAM97948.1| 633|Caenorhabditis elegans Hypothetical... 71 9e-13
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 32 0.38
Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical pr... 31 0.88
Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical p... 31 0.88
Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical pr... 31 0.88
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 28 4.7
U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily ass... 28 4.7
U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily ass... 28 4.7
U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protei... 28 6.2
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 28 6.2
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 6.2
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 6.2
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 6.2
AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical ... 28 6.2
Z81525-1|CAB04256.1| 897|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z81498-2|CAB04085.1| 760|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z81498-1|CAB04086.1| 692|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z49069-2|CAA88865.1| 333|Caenorhabditis elegans Hypothetical pr... 27 8.2
U19615-1|AAB51351.1| 897|Caenorhabditis elegans Nucampholin pro... 27 8.2
U12682-1|AAB63525.1| 692|Caenorhabditis elegans celfurPC protei... 27 8.2
>AF036706-9|AAK39281.1| 681|Caenorhabditis elegans Hypothetical
protein T07A9.9a protein.
Length = 681
Score = 80.6 bits (190), Expect = 8e-16
Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 5/201 (2%)
Frame = -3
Query: 623 DERYDVIPEXWEXHNIAXYIDPDIFXXXXXXXXXXXXXXAGGMYAAPKIELDDTVREIRE 444
DE+YD++PE WE HN+A ++DP+I G Y + D+ +E +
Sbjct: 472 DEKYDIVPEIWEGHNLADFVDPEIQSKLENLLREEELLEQAGEYESDLDSDDEETKEKLK 531
Query: 443 LARQIRNKKAILKDESRLVKQSTKPVMPRTSRAKTKQRSTSKLRKDMEKLGVDMSETGDA 264
LA QIR K+ +L + + K+ + R ++ + RS S+L ++ +LGVD+
Sbjct: 532 LALQIREKEKLLTLDHAVNKRIAGRIGSRIHGSRKRDRSMSRLENELGELGVDVDTKKMK 591
Query: 263 HFTXXXXXXXXXXXXXXXXXXXREPSNQPVADPIMRVKVKRMAHAAIAKKTKKMGL---- 96
+ D + ++ AH + GL
Sbjct: 592 NLQGQCAKPQLGKKMKVGRSRSLSAVRPAPRDELAFPDEEKRAHVDKLRTKAMRGLRREA 651
Query: 95 -KGEADRFIGTKMPKHLFAGK 36
KGEADR + PKHLF GK
Sbjct: 652 KKGEADRHVYDLKPKHLFCGK 672
>AF036706-10|AAM97948.1| 633|Caenorhabditis elegans Hypothetical
protein T07A9.9b protein.
Length = 633
Score = 70.5 bits (165), Expect = 9e-13
Identities = 35/114 (30%), Positives = 60/114 (52%)
Frame = -3
Query: 623 DERYDVIPEXWEXHNIAXYIDPDIFXXXXXXXXXXXXXXAGGMYAAPKIELDDTVREIRE 444
DE+YD++PE WE HN+A ++DP+I G Y + D+ +E +
Sbjct: 472 DEKYDIVPEIWEGHNLADFVDPEIQSKLENLLREEELLEQAGEYESDLDSDDEETKEKLK 531
Query: 443 LARQIRNKKAILKDESRLVKQSTKPVMPRTSRAKTKQRSTSKLRKDMEKLGVDM 282
LA QIR K+ +L + + K+ + R ++ + RS S+L ++ +LGVD+
Sbjct: 532 LALQIREKEKLLTLDHAVNKRIAGRIGSRIHGSRKRDRSMSRLENELGELGVDV 585
Score = 34.7 bits (76), Expect = 0.054
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = -3
Query: 155 VKVKRMAHAAIAKKTKKMGLKGEADRFIGTKMPKHLFAGK 36
V K+M + ++G KGEADR + PKHLF GK
Sbjct: 585 VDTKKMKNLQGQCAKPQLGKKGEADRHVYDLKPKHLFCGK 624
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 31.9 bits (69), Expect = 0.38
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 195 GTLQPAG--GRPHHARESKEDGPRGHRQEDQEDGPQGRGGP 79
G PAG G+P ++ +DGP G D + GP G GP
Sbjct: 159 GPAGPAGSDGQPGAPGDAGKDGPPGPPGPDGDSGPNGEAGP 199
>Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 30.7 bits (66), Expect = 0.88
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = -3
Query: 452 IRELARQIRNKKAILKDESRLVKQSTKPVMPRTSRAKTKQRSTSKLRKDMEKLGVD 285
+ + RQ +L+ +S + + T+ + + R+K + T LRKDM++L D
Sbjct: 749 VADAKRQNDELSELLESKSTTLVEKTRSLEEQEERSKKLRAETELLRKDMQELETD 804
>Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 30.7 bits (66), Expect = 0.88
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = -3
Query: 452 IRELARQIRNKKAILKDESRLVKQSTKPVMPRTSRAKTKQRSTSKLRKDMEKLGVD 285
+ + RQ +L+ +S + + T+ + + R+K + T LRKDM++L D
Sbjct: 749 VADAKRQNDELSELLESKSTTLVEKTRSLEEQEERSKKLRAETELLRKDMQELETD 804
>Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 30.7 bits (66), Expect = 0.88
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = -3
Query: 452 IRELARQIRNKKAILKDESRLVKQSTKPVMPRTSRAKTKQRSTSKLRKDMEKLGVD 285
+ + RQ +L+ +S + + T+ + + R+K + T LRKDM++L D
Sbjct: 749 VADAKRQNDELSELLESKSTTLVEKTRSLEEQEERSKKLRAETELLRKDMQELETD 804
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 177 GGRPHHARESKEDGPRGHRQEDQEDGPQGRGGP 79
GGRP + GPRG + + G GR GP
Sbjct: 189 GGRPGNPGRPGPAGPRGEPGTEYKPGQPGRPGP 221
>U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily
assigned gene nameprotein 279, isoform a protein.
Length = 1020
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 386 KQSTKPVMPRTSRAKTKQRSTSKLRKDMEKLGVDMSETG 270
+ +T+P +PRT RA TK +T + R+ + D + G
Sbjct: 332 QSATEPPIPRTKRAYTKNPNTIRKRRMKKNQSDDEEDDG 370
>U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily
assigned gene nameprotein 279, isoform b protein.
Length = 1061
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 386 KQSTKPVMPRTSRAKTKQRSTSKLRKDMEKLGVDMSETG 270
+ +T+P +PRT RA TK +T + R+ + D + G
Sbjct: 373 QSATEPPIPRTKRAYTKNPNTIRKRRMKKNQSDDEEDDG 411
>U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protein 8
protein.
Length = 282
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = -2
Query: 186 QPAGGRPHHARESKEDGPRGHRQEDQEDGPQGRGGP 79
Q GRP A GPRG + G GR GP
Sbjct: 179 QGDAGRPGAAGRPGPPGPRGEPGTEYRPGQAGRAGP 214
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +2
Query: 497 CRQPRAVPRPSPTLPXYQRCPGRYXRRCCVPPXSP 601
C P +P P P P CP ++ C PP P
Sbjct: 41 CAAPMPMPMPMPVCPPPPPCPAQF---CPPPPICP 72
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 27.9 bits (59), Expect = 6.2
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Frame = -2
Query: 192 TLQPAGGRPHHARESKEDGPRGHRQEDQEDGPQG--RGGPVHRHQDAEASVRWKXVGSAR 19
T P GRP K +E GP+G RGGP R E+S + R
Sbjct: 351 TGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGP--RKSSEESSESREEPRGPR 408
Query: 18 RTP 10
R+P
Sbjct: 409 RSP 411
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 27.9 bits (59), Expect = 6.2
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Frame = -2
Query: 192 TLQPAGGRPHHARESKEDGPRGHRQEDQEDGPQG--RGGPVHRHQDAEASVRWKXVGSAR 19
T P GRP K +E GP+G RGGP R E+S + R
Sbjct: 372 TGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGP--RKSSEESSESREEPRGPR 429
Query: 18 RTP 10
R+P
Sbjct: 430 RSP 432
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 27.9 bits (59), Expect = 6.2
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Frame = -2
Query: 192 TLQPAGGRPHHARESKEDGPRGHRQEDQEDGPQG--RGGPVHRHQDAEASVRWKXVGSAR 19
T P GRP K +E GP+G RGGP R E+S + R
Sbjct: 357 TGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGP--RKSSEESSESREEPRGPR 414
Query: 18 RTP 10
R+P
Sbjct: 415 RSP 417
>AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical
protein Y108G3AL.7 protein.
Length = 1192
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -3
Query: 482 KIELDDTVREIRELARQIRNKKAILKDESRLVKQSTKP-VMPRTSRAKTKQRSTSKLRKD 306
K+E RE + L + R +K LK+E+R K+ K +M K + S ++++++
Sbjct: 314 KLEKQAMKREKQRLKEEEREEKLRLKEENREKKRREKARIMELKRLEKVYRTSNARIQEN 373
Query: 305 MEK 297
EK
Sbjct: 374 HEK 376
>Z81525-1|CAB04256.1| 897|Caenorhabditis elegans Hypothetical protein
F33A8.1 protein.
Length = 897
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/71 (23%), Positives = 26/71 (36%)
Frame = -2
Query: 501 RHVRRAQDRAGRHREGDQGTGPADTQQEGHPQGRVSPGEAVHEAGDAAHLASQDQAEVHL 322
R R ++ +G R GD+ + QE H + R + + D S D +
Sbjct: 816 RKGRERREDSGERRRGDRDRRDRNKDQEDHREDRRDRSKDREDRRDRRRHDSDDDRKTRR 875
Query: 321 QAQEGHGETRR 289
E G RR
Sbjct: 876 DRSEERGGRRR 886
>Z81498-2|CAB04085.1| 760|Caenorhabditis elegans Hypothetical
protein F11A6.1b protein.
Length = 760
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 522 RGTARGWRHVRRAQDRAGRHREGDQGTGPADTQQEGHP 409
R RG+R +RR D E D GT + ++ HP
Sbjct: 135 RRVKRGYRRIRRHTDDNDIFEEDDDGTQISKSRNRKHP 172
>Z81498-1|CAB04086.1| 692|Caenorhabditis elegans Hypothetical
protein F11A6.1a protein.
Length = 692
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 522 RGTARGWRHVRRAQDRAGRHREGDQGTGPADTQQEGHP 409
R RG+R +RR D E D GT + ++ HP
Sbjct: 135 RRVKRGYRRIRRHTDDNDIFEEDDDGTQISKSRNRKHP 172
>Z49069-2|CAA88865.1| 333|Caenorhabditis elegans Hypothetical
protein K12D12.3 protein.
Length = 333
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -2
Query: 141 DGPRGHRQEDQEDGPQGRGGPVHRHQDAEASVRWKXVG 28
DG GH E GPQG+ GP R + A R K +G
Sbjct: 204 DGNPGHPGEMGAPGPQGKQGPDGRQGEKGADGR-KPIG 240
>U19615-1|AAB51351.1| 897|Caenorhabditis elegans Nucampholin protein.
Length = 897
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/71 (23%), Positives = 26/71 (36%)
Frame = -2
Query: 501 RHVRRAQDRAGRHREGDQGTGPADTQQEGHPQGRVSPGEAVHEAGDAAHLASQDQAEVHL 322
R R ++ +G R GD+ + QE H + R + + D S D +
Sbjct: 816 RKGRERREDSGERRRGDRDRRDRNKDQEDHREDRRDRSKDREDRRDRRRHDSDDDRKTRR 875
Query: 321 QAQEGHGETRR 289
E G RR
Sbjct: 876 DRSEERGGRRR 886
>U12682-1|AAB63525.1| 692|Caenorhabditis elegans celfurPC protein
protein.
Length = 692
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 522 RGTARGWRHVRRAQDRAGRHREGDQGTGPADTQQEGHP 409
R RG+R +RR D E D GT + ++ HP
Sbjct: 135 RRVKRGYRRIRRHTDDNDIFEEDDDGTQISKSRNRKHP 172
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,196,954
Number of Sequences: 27780
Number of extensions: 204147
Number of successful extensions: 1266
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1257
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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