Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14k20
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              31   0.007
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    23   1.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   1.8  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   5.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 31.5 bits (68), Expect = 0.007
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -2

Query: 186  QPAGGRPHHARESKEDGPRGHRQEDQEDGPQ-GRGGPVHRHQDAEASVRWKXVGSARRTP 10
            Q  G   H+    + D P     E+ + G Q G+ G  + H  +  SV  + VGSAR  P
Sbjct: 1793 QGGGSGTHNVFSPEYDDPANCAPEEDQYGSQYGQYGAPYDHYGSRGSVGRRSVGSARNIP 1852


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
          protein precursor protein.
          Length = 153

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 1  HYLRGPSCRPHXFPANRCFG 60
          H+L+ P C P   P+  C G
Sbjct: 36 HFLQYPGCVPKPIPSYACRG 55


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 452 IRELARQIRNKKAILKDESRLVKQSTKPVMPRTSRAKT 339
           +REL +    K  ++K   R +K   K     T  AKT
Sbjct: 421 LRELTQVTEEKPRVMKMGKRNIKAQVKRFRMETKAAKT 458


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 489 RAQDRAGRHREGDQGTGPADTQQEGHPQGRVS 394
           R Q +A +H+     T P   QQ+  PQG  S
Sbjct: 224 RQQQQAQQHQ--GVVTSPLSQQQQAAPQGAAS 253


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,796
Number of Sequences: 438
Number of extensions: 2319
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)