Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14k17
(666 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 63 2e-10
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 63 2e-10
06_03_0433 - 20718726-20719895 30 1.4
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489... 29 2.5
10_02_0100 + 5296783-5297568 28 5.8
08_02_1540 + 27694565-27694579,27696364-27696447,27696599-276967... 28 7.7
02_05_0388 + 28541751-28541820,28541912-28542054,28542199-285422... 28 7.7
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 28 7.7
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 63.3 bits (147), Expect = 2e-10
Identities = 45/108 (41%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Frame = -2
Query: 335 QFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXKEGDDIFAT 156
+ N P+RR+ Q YVI TST++ + + K F+D YF EG ++F T
Sbjct: 134 KINGVPIRRVNQPYVIATSTKVDISGVNVEK-FDDKYF---SRDKKQKAKKTEG-ELFET 188
Query: 155 KKE--KYVPSEQRKTDQKTVDEAVIKAIGARPDKKMLRGYLKAAFGLR 18
+KE K +P E +K DQK VD +IKAI A PD L+ YL A F LR
Sbjct: 189 EKEATKNLP-EFKKEDQKVVDAELIKAIEAVPD---LKTYLGARFSLR 232
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 62.9 bits (146), Expect = 2e-10
Identities = 55/163 (33%), Positives = 77/163 (47%), Gaps = 13/163 (7%)
Frame = -2
Query: 494 EPEQYPSNVGSPSTPLRRKS---------VPHLVAVHSASMYAGSDPT*R*ELFAFSSLV 342
EP+ YP++ P P RK+ P V + A Y G +L + L+
Sbjct: 47 EPKFYPADDVKPRAPSTRKANPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLI 106
Query: 341 DMQF--NSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXKEGDD 168
F N P+RR+ Q YVI TST++ + K+ K F+D YF EG +
Sbjct: 107 TGPFKINGVPIRRVNQAYVIATSTKVDISGVKVDK-FDDKYF---ARDKKAKAKKTEG-E 161
Query: 167 IFATKKE--KYVPSEQRKTDQKTVDEAVIKAIGARPDKKMLRG 45
+F T+KE K +P + +K DQK VD +IKAI PD K G
Sbjct: 162 LFETEKEATKNLP-DFKKDDQKAVDAELIKAIEVVPDLKSYLG 203
>06_03_0433 - 20718726-20719895
Length = 389
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 156 KKREIRSI*AAQNRSEDSRRGCDQSHRSPTRQEDAPRIPQG 34
KK + S A+++ S+D++ G D H S T ++ +P G
Sbjct: 189 KKEAVDSQNASESLSDDAKGGTDDEHSSGTLPDETGNLPSG 229
>02_03_0307 +
17546263-17546299,17546522-17548018,17548859-17548949,
17549054-17549621,17550591-17550670,17550993-17551077,
17551172-17551263,17551355-17551423,17551587-17551655,
17552217-17552510,17552761-17552797,17552883-17552972,
17553520-17553585,17553704-17553818,17553902-17553940,
17554519-17554700
Length = 1136
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 310 AFLSAM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSN 185
AFL+ + PP + H C N S++I R + N QSN
Sbjct: 544 AFLNLVAKFPPTKRHINAEACSNLSLLIDDMRRKLNLNEQSN 585
>10_02_0100 + 5296783-5297568
Length = 261
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 100 TRL*SKPSEPDPTRRCSADTSRRPSDSARAQYP 2
TR SKP P PT+ SA + +D A A P
Sbjct: 142 TRSSSKPPAPAPTKTASASDHAKKTDMAAAHKP 174
>08_02_1540 +
27694565-27694579,27696364-27696447,27696599-27696731,
27696840-27696951,27697530-27697629,27697810-27697937,
27698046-27698115,27698548-27698636,27698719-27698764,
27698854-27698924,27699002-27699075,27699341-27699433,
27699539-27699572,27699704-27699789,27702147-27702223,
27702445-27702533,27702630-27702813,27703068-27703249,
27703962-27704064,27704159-27704490,27704577-27705018,
27705749-27705846,27706988-27707081,27707666-27707787,
27708025-27708078,27708185-27708304,27708595-27708799,
27708889-27709059,27709155-27709310,27709375-27709431,
27709474-27709580,27709708-27709798,27709931-27710072,
27710149-27710305,27710400-27710516,27710596-27710722,
27710844-27711066,27711460-27711466,27711656-27711788
Length = 1574
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -3
Query: 514 WR*EEWGNQNSTPQT*EV--LLPHSGENPCLIWWP 416
W+ E Q+++P ++ L H+G+ C++WWP
Sbjct: 86 WKIPELHGQSNSPPLEQLFTLDEHTGKIRCVLWWP 120
>02_05_0388 +
28541751-28541820,28541912-28542054,28542199-28542248,
28543087-28543210,28543765-28543770
Length = 130
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 388 PTQPEDRNCLHSPRW*TCSS 329
PT PE+ CL+ W CSS
Sbjct: 18 PTSPEEEKCLNLELWHACSS 37
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 27.9 bits (59), Expect = 7.7
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = -3
Query: 259 TSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLP---QKKRNTFHLSSAKPIRRQSTRL* 89
T + +S RR RS S +S ++ ++ P K R+ S P+RR +R
Sbjct: 522 TRSISRSSARSLQRRSRSRSLERSPVRKSVSRSPPTMDKGRSISRTSGRLPLRRSISRSP 581
Query: 88 SKPSEPDPTRRCSADTSRRPSDS 20
+P P+R +T R S S
Sbjct: 582 DRPYRRIPSRSPRKNTRRSISRS 604
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,859,166
Number of Sequences: 37544
Number of extensions: 437547
Number of successful extensions: 1177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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