Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14k17
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.37 
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    24   1.1  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    24   1.1  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   2.6  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
 Frame = -3

Query: 301 SAM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSA 122
           +A+ S PPP F  +  +  + S ++++ R  +   +  +A   M  +P    N  ++S  
Sbjct: 374 TALMSQPPPNFGVSQVSPVSMSALVSAVRSPAGGQLPPSAGAPMPPIP----NMSNMSGM 429

Query: 121 KPIRRQSTRL*SKPSEPD---PTRRCSADTS 38
            P+      + + P+ P    P RR  +D S
Sbjct: 430 PPLPNMPGSMPTMPTMPSMAGPIRRRISDKS 460


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 84  FDHSLVDCLLIGFALLRWNVFLFFCGKDVITLFA 185
           FD +L+DC+  G   L   V ++    +  TLFA
Sbjct: 29  FDSTLLDCIQSGIENLDSGVGIYAPDAEAYTLFA 62


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 84  FDHSLVDCLLIGFALLRWNVFLFFCGKDVITLFA 185
           FD +L+DC+  G   L   V ++    +  TLFA
Sbjct: 45  FDSTLLDCIQSGIENLDSGVGIYAPDAEAYTLFA 78


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -1

Query: 393 RIRPNLKIGTVCILLAGRHAVQFVPVTPHSSALCDRHL 280
           R+ PNL I  + + +  R   + +PV P +    D+++
Sbjct: 119 RLNPNLFIYALSVAILHRPDTKDLPVPPLTEVFPDKYM 156


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/41 (19%), Positives = 22/41 (53%)
 Frame = -2

Query: 362 FAFSSLVDMQFNSCPLRRIPQRYVIGTSTRISLGNFKLPKH 240
           FAF + +  +  + PL+++  +Y++ ++    L   +  K+
Sbjct: 312 FAFVNTIYRRKKTVPLKKVNSKYILKSTLTPKLARKQFQKN 352


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -3

Query: 457 LPHSGENPCLIWWPSIQQACTQDPTQ 380
           +P   +NP +  W     AC+  P Q
Sbjct: 373 IPEPSKNPAMGHWQMSCVACSPPPRQ 398


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,471
Number of Sequences: 438
Number of extensions: 4065
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)