Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14k16
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    27   2.0  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   4.6  
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    25   8.0  

>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 450 KPNDAHDRTEIPMIIVNNPEQPIPNPGAL-NTP-PPKTRR 337
           KP   H R+ +P   V    QP P+P  + ++P PP  +R
Sbjct: 247 KPKRKHTRSTVPTSNVEPVSQPQPSPDKIVSSPNPPSAKR 286


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = -2

Query: 459 KINKPNDAHDRTEIPMIIVNNPEQPIPNPGALNTPPPKTRRNL*NHGILAFSSS 298
           +I  P   +  T I    V N   PI +   LNT  P T  ++ N      SSS
Sbjct: 371 QITSPTAVNSSTPITSSSVLNSSTPITSSSILNTSTPITSSSVLNSSTPITSSS 424



 Score = 25.0 bits (52), Expect = 8.0
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = -2

Query: 426  TEIPMIIVNNPEQPIPNPGALNTPPPKTRRNL*NHGILAFSSS 298
            T I    V N   PI +  ALNT PP T   + N      SS+
Sbjct: 1630 TPITSSTVLNSSTPITSSTALNTSPPITSSTVVNSSTPITSST 1672


>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 474 LYRYYKINKPNDAHDRTEIPMIIVN 400
           +Y YY+I K N      E+  I++N
Sbjct: 347 VYNYYRITKGNKKEAEKEVEYIVLN 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,144,707
Number of Sequences: 5004
Number of extensions: 38526
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)