Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14k16
         (580 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249...    31   0.66 
02_05_1040 - 33709588-33709880,33709960-33710200,33710498-337106...    28   4.7  
10_05_0064 + 8712503-8712507,8714248-8714358,8715018-8715630           27   8.2  
08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007           27   8.2  

>11_06_0767 +
           27121761-27123335,27123701-27123910,27124843-27124911,
           27125387-27125656,27126027-27126377,27126480-27126757,
           27126887-27128330
          Length = 1398

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 417 PMIIVNNPEQPIP-NPGALNTPPPKTRRNL*NHGILAFSSSTP 292
           P  + N P  P P N GA N  PP +  NL NHG    +S  P
Sbjct: 525 PQDMRNGPPYPQPDNLGAFNMGPPHSVPNLHNHGPFPEASMRP 567


>02_05_1040 -
           33709588-33709880,33709960-33710200,33710498-33710672,
           33710781-33710892,33711906-33712145,33712253-33712436
          Length = 414

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = +1

Query: 373 WIRNGLFWIVHDDHW---DLCAIVSVVGLIYF-IIAIQFT*RYNN*D*NXK*HKGGIMCA 540
           WI +  F    D  W   D    VS+   ++F I+AI      +  D   K H GG M  
Sbjct: 62  WINH--FHKTPDREWFETDAVLRVSLGNFVFFTILAIIMAGIKDQKDPRDKIHHGGWMAK 119

Query: 541 IFCKMIXVFDYF 576
           IFC ++ VF  F
Sbjct: 120 IFCWVVIVFLMF 131


>10_05_0064 + 8712503-8712507,8714248-8714358,8715018-8715630
          Length = 242

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 399 NPEQPIPNPGALNTPPPKTRRNL*NHGILAFSSST 295
           NP  P P P  + T PP  +  + +H +L   SST
Sbjct: 90  NPSPPAPTPAHVFTEPPPAKAEV-HHAVLFRFSST 123


>08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007
          Length = 952

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 373 WIRNGLFWIVHDDHWDLCAIVSVVGLIYFIIAIQF 477
           W RNG FW+       L A++ VV  + F   I F
Sbjct: 774 WFRNGQFWMTASCSAYLAAVLQVVTKVVFRRDISF 808


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,430,905
Number of Sequences: 37544
Number of extensions: 270480
Number of successful extensions: 835
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)