Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14k16
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22179-14|CAI06052.1|  443|Caenorhabditis elegans Hypothetical p...    30   1.4  
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot...    29   2.4  
Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    27   7.3  
AC006762-2|AAF60558.2|  607|Caenorhabditis elegans Hypothetical ...    27   9.6  

>Z22179-14|CAI06052.1|  443|Caenorhabditis elegans Hypothetical
           protein F58A4.14 protein.
          Length = 443

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 402 NNPEQPIPNPGALNTPPPKTRR 337
           +NPE+ +P P +L+ PPP   R
Sbjct: 20  DNPEEVVPEPTSLDVPPPPPER 41


>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
           3, isoform b protein.
          Length = 1178

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 420 IPMIIVNNPEQPIPNPGALNTPPP-KTRRNL*NHGILAFSS 301
           +P I + +P +P P P     PPP  + R+L  HG LA S+
Sbjct: 657 LPRIRIVSPLEPDPPPIPRRRPPPASSSRHLNLHGSLALSA 697


>Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical
           protein F33E2.6 protein.
          Length = 846

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -2

Query: 447 PNDAHDRTEIPMIIVNNPEQPIPNPGALNTPPPKT 343
           PN    RTE+PM +   P    P   A  T PPKT
Sbjct: 646 PNTEAPRTEVPMTV--PPRTEPPKTEAPRTVPPKT 678


>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 417 PMIIVNNPEQPIPNPGALNTPPPK 346
           P +I NN  +PI  P A+  PPP+
Sbjct: 385 PPVIQNNMGRPIAPPAAMVRPPPQ 408


>AC006762-2|AAF60558.2|  607|Caenorhabditis elegans Hypothetical
           protein Y42G9A.4a protein.
          Length = 607

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 423 EIPMIIVNNPEQPIPNPGALNTPPP 349
           EI + +   P  P+P+PGA +T PP
Sbjct: 203 EIALSLPVPPLTPLPSPGAQSTAPP 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,970,254
Number of Sequences: 27780
Number of extensions: 222241
Number of successful extensions: 628
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)