Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14k16
         (580 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    24   1.2  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   2.2  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   3.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   5.0  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   6.7  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   6.7  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   8.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.8  

>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -2

Query: 471 YRYYKINKPNDAHDRTEIPMIIVNNPEQPIPNPGALNTPPPK 346
           Y+Y   N  N+ + +      I+N  + P+P P      PP+
Sbjct: 89  YKYSNYNNYNNYNKKLYYKNYIINIEQIPVPVPIYCGNFPPR 130


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 347 LGGGVFSAPGLGMGCSGLFTMIIG 418
           L GGV      GM C  + T+I+G
Sbjct: 278 LAGGVAIGTAAGMMCQPVGTLIVG 301


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = -2

Query: 471 YRYYKINKPNDAHDRTEIPMIIVNNPEQPIPNPGALNTPPPK 346
           Y  Y  N  N+ + +      I+N  + P+P P      PP+
Sbjct: 330 YNNYNNNNYNNYNKKLYYKNYIINIEQIPVPVPIYCGNFPPR 371


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 165 PSMNTIWLTALTKLHDQHSRALLFRPP 85
           P+  T+ +T+L  L  QH+++    PP
Sbjct: 274 PARVTLGVTSLLTLSTQHAKSQASLPP 300


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 517 VIXNSNPNYCIFM*TVSL 464
           VI +  P YC+F  TV+L
Sbjct: 523 VIGHRMPRYCLFGNTVNL 540


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 517 VIXNSNPNYCIFM*TVSL 464
           VI +  P YC+F  TV+L
Sbjct: 523 VIGHRMPRYCLFGNTVNL 540


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 465 YYKINKPNDAH 433
           YYK+NK +DA+
Sbjct: 73  YYKLNKIHDAY 83


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 402 NNPEQPIPNPGALNTPPP 349
           +NP  P+P+P  L+   P
Sbjct: 440 SNPVSPVPSPDPLDLAIP 457


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 452  ISPTTLTIAQRSQ*SS*TIQNNP 384
            I+PTT+T +Q       TIQ  P
Sbjct: 1277 IAPTTITSSQSPGNQQQTIQTQP 1299


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,677
Number of Sequences: 438
Number of extensions: 3612
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)