Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14k15
(236 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 108 8e-26
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 108 8e-26
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 108 8e-26
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 108 8e-26
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 108 8e-26
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 69 8e-14
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 46 5e-07
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 38 2e-04
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 28 0.14
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo... 28 0.19
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 26 0.76
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 1.0
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 25 1.3
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 25 1.8
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 24 2.3
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos... 24 2.3
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe... 24 2.3
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 24 3.1
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 24 3.1
SPBC13G1.12 |did2||vacuolar sorting protein Did2|Schizosaccharom... 23 4.1
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 23 4.1
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe... 23 4.1
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |... 23 5.4
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 23 5.4
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 23 5.4
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 23 5.4
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 23 7.1
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 22 9.4
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc... 22 9.4
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 22 9.4
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 108 bits (260), Expect = 8e-26
Identities = 49/67 (73%), Positives = 59/67 (88%)
Frame = -3
Query: 219 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 40
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 39 IQKESTL 19
IQKESTL
Sbjct: 61 IQKESTL 67
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 108 bits (260), Expect = 8e-26
Identities = 49/67 (73%), Positives = 59/67 (88%)
Frame = -3
Query: 219 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 40
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 39 IQKESTL 19
IQKESTL
Sbjct: 61 IQKESTL 67
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 108 bits (260), Expect = 8e-26
Identities = 49/67 (73%), Positives = 59/67 (88%)
Frame = -3
Query: 219 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 40
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 39 IQKESTL 19
IQKESTL
Sbjct: 61 IQKESTL 67
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 108 bits (260), Expect = 8e-26
Identities = 49/67 (73%), Positives = 59/67 (88%)
Frame = -3
Query: 219 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 40
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 39 IQKESTL 19
IQKESTL
Sbjct: 61 IQKESTL 67
Score = 108 bits (260), Expect = 8e-26
Identities = 49/67 (73%), Positives = 59/67 (88%)
Frame = -3
Query: 219 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 40
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 39 IQKESTL 19
IQKESTL
Sbjct: 137 IQKESTL 143
Score = 108 bits (260), Expect = 8e-26
Identities = 49/67 (73%), Positives = 59/67 (88%)
Frame = -3
Query: 219 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 40
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 39 IQKESTL 19
IQKESTL
Sbjct: 213 IQKESTL 219
Score = 108 bits (260), Expect = 8e-26
Identities = 49/67 (73%), Positives = 59/67 (88%)
Frame = -3
Query: 219 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 40
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 39 IQKESTL 19
IQKESTL
Sbjct: 289 IQKESTL 295
Score = 108 bits (260), Expect = 8e-26
Identities = 49/67 (73%), Positives = 59/67 (88%)
Frame = -3
Query: 219 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 40
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 39 IQKESTL 19
IQKESTL
Sbjct: 365 IQKESTL 371
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 108 bits (260), Expect = 8e-26
Identities = 49/67 (73%), Positives = 59/67 (88%)
Frame = -3
Query: 219 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 40
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 39 IQKESTL 19
IQKESTL
Sbjct: 61 IQKESTL 67
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 68.9 bits (161), Expect = 8e-14
Identities = 30/67 (44%), Positives = 46/67 (68%)
Frame = -3
Query: 219 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 40
M I +KTLTGK I + +P + V+ +K+++ +KEG+P QQRLI+AGKQ+ D K Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 39 IQKESTL 19
++ S L
Sbjct: 61 LEGGSVL 67
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 46.4 bits (105), Expect = 5e-07
Identities = 21/65 (32%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Frame = -3
Query: 219 MQIFIKTLTGKTITAETEPAET-VADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADY 43
M + K L + A+T +++LK+KI ++ V++Q+LI++G+ L D KT+ +Y
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEY 60
Query: 42 NIQKE 28
NI+++
Sbjct: 61 NIKEQ 65
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 37.9 bits (84), Expect = 2e-04
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = -3
Query: 219 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 40
+ + IK + + +V LK+ IA + ++QRLI+AG+ L+D +++ Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 39 IQ 34
IQ
Sbjct: 64 IQ 65
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 28.3 bits (60), Expect = 0.14
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = -3
Query: 216 QIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMAD 46
+I + T+ K + +TV +LK+ IA P D+ +LI AG+ L + + +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEE 61
>SPBC1604.20c |tea2|klp4|kinesin-like protein
Tea2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 27.9 bits (59), Expect = 0.19
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = -3
Query: 159 ETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLPHGV 7
E ++D +IAD D++++I+A + + + +AD+N Q + PH +
Sbjct: 534 ELLSDHNFEIADLRDELQDKEQIIYALRYAQKQRDIADFN-QSLAKFPHKI 583
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 0.76
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +1
Query: 82 RKDKSLLIYGHTFFIGNFLLEIGHRLCGFRFGGNGFARQCFD 207
RK+ +YGH F F + LCG F N QC D
Sbjct: 396 RKESVHEVYGHKFLQHQFYQIMRCALCG-EFLKNAAGMQCID 436
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 1.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 223 KNANIHQNIDGQNHYRRNGTRRDGGRSQAKN 131
K+ N Q+I G+++ R+N GRS N
Sbjct: 1518 KDKNKRQDISGESNSRQNNAISRAGRSNGSN 1548
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 25.0 bits (52), Expect = 1.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 52 HSFGIFQLFARKDKSLLIYGH 114
H FGIF + D S+ YGH
Sbjct: 260 HVFGIFVQYPAADGSIFDYGH 280
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 24.6 bits (51), Expect = 1.8
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -3
Query: 168 EPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDS-KTMADYNIQKES 25
EPA + L ++ +D+E D++ F G L+ S KT+ D+ ++E+
Sbjct: 26 EPASSRRRLAEENSDEENEEFDEEGGRFFGSGLKKSEKTVLDFLDEQEA 74
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 24.2 bits (50), Expect = 2.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 207 IKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQR 94
IK+L + +TE A+ +A + +KI E DQQ+
Sbjct: 429 IKSLHESVSSLDTERADLLAKINEKIESLELEKHDQQK 466
>SPCC1442.07c |||ubiquitin/metalloprotease fusion
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 282
Score = 24.2 bits (50), Expect = 2.3
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = -3
Query: 192 GKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDS 61
G I +TV D K+K+ + V +L++ G +DS
Sbjct: 9 GNVIALSFNENDTVLDAKEKLGQEIDVSPSLIKLLYKGNLSDDS 52
>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 590
Score = 24.2 bits (50), Expect = 2.3
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 49 GHSFGIFQLFARKDKSLLIYGHTFFIGNFLLE 144
G +FG+ ++F D + G +GN +LE
Sbjct: 79 GSAFGLDKIFQSSDSGNIAEGLELDLGNIMLE 110
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 23.8 bits (49), Expect = 3.1
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = -3
Query: 180 TAETEPAETV---ADLKQKIADKEGVPVDQQRLIFAGKQLED 64
T E + E V A ++QK+A+KE +Q+ + A K ED
Sbjct: 297 TVERQAREEVRYRAIMRQKMAEKEKQEKEQRLFMLAQKARED 338
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 23.8 bits (49), Expect = 3.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 49 GHSFGIFQLFARKDKSLLIYGHTFFIG 129
GHS GIF + + D SL+ G IG
Sbjct: 305 GHSEGIFSIACQPDGSLVSSGGNDAIG 331
>SPBC13G1.12 |did2||vacuolar sorting protein
Did2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 178
Score = 23.4 bits (48), Expect = 4.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 186 TITAETEPAETVADLKQKIADKEGVPVDQ 100
++TA P E V L Q +AD+ G+ +Q
Sbjct: 116 SVTAVDTPQEDVDLLMQTVADEAGLEFNQ 144
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 23.4 bits (48), Expect = 4.1
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = -1
Query: 182 LPPKRNPQRRWPISSKKLPIKKVCP*INKDLSLRANNWKIPKLWPITIFKRNLLF 18
LPP + +R S + +KK + L+LR ++ + LWPI + + ++F
Sbjct: 1468 LPPLIDLVKRLITSDPEGVLKKDLFLFIRALALRTSSKHLLPLWPIVVSELLIIF 1522
>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 408
Score = 23.4 bits (48), Expect = 4.1
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = -2
Query: 103 STKTYLCGQTIGRFQNYGRLQYSKG 29
S+ T CG F YG L Y G
Sbjct: 41 SSATVTCGGDANEFNEYGHLGYRIG 65
>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 23.0 bits (47), Expect = 5.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 103 STKTYLCGQTIGRFQNYGRLQYSKGIYSSTWCY 5
S KT LC Q + R ++ +SK I+ +++ Y
Sbjct: 19 SGKTQLCEQLLERLKSSAPSTFSKLIHLTSFLY 51
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 23.0 bits (47), Expect = 5.4
Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 2/18 (11%)
Frame = -2
Query: 58 NYGRLQYSKGI--YSSTW 11
NYGRLQY +G STW
Sbjct: 897 NYGRLQYLEGSDRILSTW 914
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 23.0 bits (47), Expect = 5.4
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 94 TYLCGQTIGRFQNYGRL 44
T L GQT GRF YG L
Sbjct: 792 TSLHGQTAGRFAWYGTL 808
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 23.0 bits (47), Expect = 5.4
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = -1
Query: 167 NPQRRWPISSKKLPI 123
N +RRWP+S+++L I
Sbjct: 637 NLERRWPLSTEELLI 651
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 22.6 bits (46), Expect = 7.1
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Frame = -2
Query: 226 CKNANIHQNIDG-QNHYR----RNGTRRDGGRSQ 140
CK ANIH+ I G N Y + G+ GG+ Q
Sbjct: 1232 CKKANIHEFILGLPNGYNTLCGQKGSSLSGGQKQ 1265
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 22.2 bits (45), Expect = 9.4
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -1
Query: 182 LPPKRNPQRRW 150
LPP NP+ RW
Sbjct: 371 LPPLTNPKERW 381
>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 919
Score = 22.2 bits (45), Expect = 9.4
Identities = 6/20 (30%), Positives = 12/20 (60%)
Frame = -1
Query: 101 NKDLSLRANNWKIPKLWPIT 42
N S++ W +P+LW ++
Sbjct: 738 NAPYSMKPVKWNLPRLWGLS 757
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 22.2 bits (45), Expect = 9.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 22 SRFLLNIVIGHSFGIFQLFARKDKSLLIYG 111
SRF+L + GHS + L + ++LL+ G
Sbjct: 250 SRFILYKLYGHSGSVLCLDFCRRRNLLVSG 279
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,067,605
Number of Sequences: 5004
Number of extensions: 19642
Number of successful extensions: 77
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 58
effective length of database: 2,072,246
effective search space used: 41444920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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