Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14k15
(236 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein RJP... 27 0.041
DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II lar... 25 0.13
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 23 0.67
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 21 2.7
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 21 2.7
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 21 2.7
DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein ... 20 3.6
AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein ... 20 3.6
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 19 6.2
AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex det... 19 6.2
AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 19 6.2
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 19 6.2
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 19 6.2
>Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein
RJP57-1 protein.
Length = 544
Score = 26.6 bits (56), Expect = 0.041
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -2
Query: 223 KNANIHQNIDGQNHYRRNGTRRDGGR 146
+NAN +QN D QN ++NG R++ R
Sbjct: 440 QNAN-NQNADNQNANKQNGNRQNDNR 464
Score = 22.2 bits (45), Expect = 0.89
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 223 KNANIHQNIDGQNHYRRNGTRRDGGR 146
+N N QN + QN R+N +R+G R
Sbjct: 495 QNGN-KQNDNKQNGNRQNDNKRNGNR 519
Score = 19.0 bits (37), Expect = 8.3
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -2
Query: 223 KNANIHQNIDGQNHYRRNGTRRDGGR 146
+NA+ +QN + QN R+N R++ +
Sbjct: 445 QNAD-NQNANKQNGNRQNDNRQNDNK 469
>DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II large
subunit protein.
Length = 296
Score = 25.0 bits (52), Expect = 0.13
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 136 LLEIGHRLCGFRFGGN 183
+LE+GH +CG RF GN
Sbjct: 118 MLELGHEVCG-RFYGN 132
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 22.6 bits (46), Expect = 0.67
Identities = 21/56 (37%), Positives = 26/56 (46%)
Frame = -1
Query: 194 RAKPLPPKRNPQRRWPISSKKLPIKKVCP*INKDLSLRANNWKIPKLWPITIFKRN 27
R PLPPKR R+ P S LP C D + A N +P L P T+ K +
Sbjct: 636 RLPPLPPKR--IRKMP-SMPLLPRPISCH-TTPDSFIEAPNKTLPSL-PSTLTKNS 686
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 20.6 bits (41), Expect = 2.7
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -3
Query: 213 IFIKTLTGKTI--TAETEPAETVADLKQKIADKEGVPVD 103
I++K G + TA +E AD + D VP+D
Sbjct: 257 IYVKRFFGLPVGVTAAIPTSENPADYRYFCPDGSKVPID 295
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 20.6 bits (41), Expect = 2.7
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -3
Query: 213 IFIKTLTGKTI--TAETEPAETVADLKQKIADKEGVPVD 103
I++K G + TA +E AD + D VP+D
Sbjct: 257 IYVKRFFGLPVGVTAAIPTSENPADYRYFCPDGSKVPID 295
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 20.6 bits (41), Expect = 2.7
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -3
Query: 213 IFIKTLTGKTI--TAETEPAETVADLKQKIADKEGVPVD 103
I++K G + TA +E AD + D VP+D
Sbjct: 257 IYVKRFFGLPVGVTAAIPTSENPADYRYFCPDGSKVPID 295
>DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein 2
protein.
Length = 117
Score = 20.2 bits (40), Expect = 3.6
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = -3
Query: 234 SNSVKMQIFIKTLTGKTITAETEPAET 154
++++K + + L T+TAETE ++
Sbjct: 2 ASAIKALLIVCALFIYTVTAETEEGQS 28
>AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein
protein.
Length = 117
Score = 20.2 bits (40), Expect = 3.6
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = -3
Query: 234 SNSVKMQIFIKTLTGKTITAETEPAET 154
++++K + + L T+TAETE ++
Sbjct: 2 ASAIKALLIVCALFIYTVTAETEEGQS 28
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 19.4 bits (38), Expect = 6.2
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = -2
Query: 190 QNHYRR-NGTRRDGGRSQAKNXXXXXXXXRSTKTYLCGQTIGRFQNYGRLQY 38
+N YR+ T ++ R + + S+ L TI NY +LQY
Sbjct: 275 ENSYRKYRETSKERSRDRTERERSREPKIISS---LLNNTIHNNNNYKKLQY 323
>AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 19.4 bits (38), Expect = 6.2
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = -2
Query: 190 QNHYRR-NGTRRDGGRSQAKNXXXXXXXXRSTKTYLCGQTIGRFQNYGRLQY 38
+N YR+ T ++ R + + S+ L TI NY +LQY
Sbjct: 286 ENSYRKYRETSKERSRDRTERERSREPKIISS---LLNNTIHNNNNYKKLQY 334
>AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 19.4 bits (38), Expect = 6.2
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = -2
Query: 190 QNHYRR-NGTRRDGGRSQAKNXXXXXXXXRSTKTYLCGQTIGRFQNYGRLQY 38
+N YR+ T ++ R + + S+ L TI NY +LQY
Sbjct: 286 ENSYRKYRETSKERSRDRTERERSREPKIISS---LLNNTIHNNNNYKKLQY 334
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 19.4 bits (38), Expect = 6.2
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = -2
Query: 190 QNHYRR-NGTRRDGGRSQAKNXXXXXXXXRSTKTYLCGQTIGRFQNYGRLQY 38
+N YR+ T ++ R + + S+ L TI NY +LQY
Sbjct: 275 ENSYRKYRETSKERSRDRTERERSREPKIISS---LLNNTIHNNNNYKKLQY 323
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 19.4 bits (38), Expect = 6.2
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = -1
Query: 59 KLWPITIFKRNLLFH 15
K+WP+ +++ LFH
Sbjct: 1021 KIWPMKGEEKSRLFH 1035
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,018
Number of Sequences: 438
Number of extensions: 1283
Number of successful extensions: 19
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used: 3898467
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)
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