Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14k13
         (807 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1059 - 10775143-10776063                                         39   0.005
01_01_0371 - 2898038-2898118,2898219-2898896                           32   0.47 
05_02_0078 - 6386278-6386291,6386462-6386594,6386721-6388613,639...    29   3.3  
02_05_0880 + 32466538-32467083,32467333-32467644,32467731-324682...    28   7.6  

>08_01_1059 - 10775143-10776063
          Length = 306

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +1

Query: 49  NYTSPKHFSTRT--AHTNATHKKEAKAQRGIVFIVLALALGRGLPGFGNTAVP 201
           NY   K ++++    H NA  ++ + A+RG      A A GRGL GFG+  VP
Sbjct: 110 NYCQRKFYTSQALGGHQNAHKRERSLAKRGAAVAAAAAAAGRGLYGFGDPFVP 162


>01_01_0371 - 2898038-2898118,2898219-2898896
          Length = 252

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 25/84 (29%), Positives = 38/84 (45%)
 Frame = -2

Query: 317 GCIFFCYVTEGDLVDASSDVAGRDMLLLRDEAVEDASPSGTAVLPNPGNPRPRASAKTIK 138
           GC+   Y +   L DA          LL    +  A+ S T+VL  P      +SA++ K
Sbjct: 63  GCVGNLYASFEKLDDAFVQADTAKDSLLSPVVLSPAASSNTSVLRLPAP----SSAQSSK 118

Query: 137 TIPRCAFASFLCVAFVCAVLVEKC 66
           +  RC+++S  C +FV      KC
Sbjct: 119 SFFRCSYSSNACRSFVTNASGTKC 142


>05_02_0078 -
           6386278-6386291,6386462-6386594,6386721-6388613,
           6391153-6391239,6391691-6391765,6393982-6394327,
           6394428-6394450
          Length = 856

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 673 PPQPQKWEVKHRRAHLNLKNGK 738
           PP PQ ++V  R+ H+N++N K
Sbjct: 185 PPSPQTFQVHERQKHINIENMK 206



 Score = 29.1 bits (62), Expect = 4.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 714 PPQPQKWEVKHRSAHLNLKNGK 779
           PP PQ ++V  R  H+N++N K
Sbjct: 185 PPSPQTFQVHERQKHINIENMK 206


>02_05_0880 +
           32466538-32467083,32467333-32467644,32467731-32468201,
           32468481-32469246,32469332-32469774
          Length = 845

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 733 GK*STEVPTSTSKMGNKAPKXPPRP 807
           GK S   P++    GNK P  PPRP
Sbjct: 126 GKRSATQPSARGGRGNKVPYKPPRP 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,688,472
Number of Sequences: 37544
Number of extensions: 494618
Number of successful extensions: 1501
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1493
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)