Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14k13
(807 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT015960-1|AAV36845.1| 110|Drosophila melanogaster RH46982p pro... 32 1.1
AE014296-2592|AAN11770.1| 110|Drosophila melanogaster CG32151-P... 32 1.1
AY122256-1|AAM52768.1| 1153|Drosophila melanogaster SD07343p pro... 31 1.4
AF475087-1|AAL78679.1| 1985|Drosophila melanogaster transcriptio... 31 1.4
AF217844-1|AAF34752.1| 1966|Drosophila melanogaster GRUNGE protein. 31 1.4
AE014296-1461|AAN12008.1| 1966|Drosophila melanogaster CG6964-PA... 31 1.4
AE014296-1460|AAS65054.1| 1985|Drosophila melanogaster CG6964-PD... 31 1.4
AE014296-1459|AAF50413.2| 1985|Drosophila melanogaster CG6964-PB... 31 1.4
AE014296-1458|AAO41268.1| 1988|Drosophila melanogaster CG6964-PC... 31 1.4
AY128414-1|AAM75007.1| 311|Drosophila melanogaster GH04057p pro... 29 5.7
AY061177-1|AAL28725.1| 101|Drosophila melanogaster LD14555p pro... 29 5.7
AE014298-2029|AAF48366.1| 308|Drosophila melanogaster CG9400-PA... 29 5.7
>BT015960-1|AAV36845.1| 110|Drosophila melanogaster RH46982p
protein.
Length = 110
Score = 31.9 bits (69), Expect = 1.1
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -2
Query: 707 RCFTSHF*G*GGHDGALLPVYFLSSMVRCGFGRILRPYCLA 585
RCF+SH+ GG A + + L++ + C R R +CLA
Sbjct: 6 RCFSSHYCEGGGQTNAFVSMSVLNTALECREFRRKRHFCLA 46
>AE014296-2592|AAN11770.1| 110|Drosophila melanogaster CG32151-PA
protein.
Length = 110
Score = 31.9 bits (69), Expect = 1.1
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -2
Query: 707 RCFTSHF*G*GGHDGALLPVYFLSSMVRCGFGRILRPYCLA 585
RCF+SH+ GG A + + L++ + C R R +CLA
Sbjct: 6 RCFSSHYCEGGGQTNAFVSMSVLNTALECREFRRKRHFCLA 46
>AY122256-1|AAM52768.1| 1153|Drosophila melanogaster SD07343p
protein.
Length = 1153
Score = 31.5 bits (68), Expect = 1.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 684 SKMGSKAPSCPPQPQKWEVKHRSAHL 761
S S+ PS PPQPQ+++ H S H+
Sbjct: 125 SNSNSQPPSMPPQPQQFQSPHPSPHM 150
Score = 28.7 bits (61), Expect = 9.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 649 TGSKAPSCPPQPQKWEVKHRRAHL 720
+ S+ PS PPQPQ+++ H H+
Sbjct: 127 SNSQPPSMPPQPQQFQSPHPSPHM 150
>AF475087-1|AAL78679.1| 1985|Drosophila melanogaster transcriptional
corepressor Atro protein.
Length = 1985
Score = 31.5 bits (68), Expect = 1.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 684 SKMGSKAPSCPPQPQKWEVKHRSAHL 761
S S+ PS PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
Score = 28.7 bits (61), Expect = 9.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 649 TGSKAPSCPPQPQKWEVKHRRAHL 720
+ S+ PS PPQPQ+++ H H+
Sbjct: 959 SNSQPPSMPPQPQQFQSPHPSPHM 982
>AF217844-1|AAF34752.1| 1966|Drosophila melanogaster GRUNGE protein.
Length = 1966
Score = 31.5 bits (68), Expect = 1.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 684 SKMGSKAPSCPPQPQKWEVKHRSAHL 761
S S+ PS PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
Score = 28.7 bits (61), Expect = 9.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 649 TGSKAPSCPPQPQKWEVKHRRAHL 720
+ S+ PS PPQPQ+++ H H+
Sbjct: 959 SNSQPPSMPPQPQQFQSPHPSPHM 982
>AE014296-1461|AAN12008.1| 1966|Drosophila melanogaster CG6964-PA,
isoform A protein.
Length = 1966
Score = 31.5 bits (68), Expect = 1.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 684 SKMGSKAPSCPPQPQKWEVKHRSAHL 761
S S+ PS PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
Score = 28.7 bits (61), Expect = 9.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 649 TGSKAPSCPPQPQKWEVKHRRAHL 720
+ S+ PS PPQPQ+++ H H+
Sbjct: 959 SNSQPPSMPPQPQQFQSPHPSPHM 982
>AE014296-1460|AAS65054.1| 1985|Drosophila melanogaster CG6964-PD,
isoform D protein.
Length = 1985
Score = 31.5 bits (68), Expect = 1.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 684 SKMGSKAPSCPPQPQKWEVKHRSAHL 761
S S+ PS PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
Score = 28.7 bits (61), Expect = 9.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 649 TGSKAPSCPPQPQKWEVKHRRAHL 720
+ S+ PS PPQPQ+++ H H+
Sbjct: 959 SNSQPPSMPPQPQQFQSPHPSPHM 982
>AE014296-1459|AAF50413.2| 1985|Drosophila melanogaster CG6964-PB,
isoform B protein.
Length = 1985
Score = 31.5 bits (68), Expect = 1.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 684 SKMGSKAPSCPPQPQKWEVKHRSAHL 761
S S+ PS PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
Score = 28.7 bits (61), Expect = 9.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 649 TGSKAPSCPPQPQKWEVKHRRAHL 720
+ S+ PS PPQPQ+++ H H+
Sbjct: 959 SNSQPPSMPPQPQQFQSPHPSPHM 982
>AE014296-1458|AAO41268.1| 1988|Drosophila melanogaster CG6964-PC,
isoform C protein.
Length = 1988
Score = 31.5 bits (68), Expect = 1.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 684 SKMGSKAPSCPPQPQKWEVKHRSAHL 761
S S+ PS PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
Score = 28.7 bits (61), Expect = 9.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 649 TGSKAPSCPPQPQKWEVKHRRAHL 720
+ S+ PS PPQPQ+++ H H+
Sbjct: 959 SNSQPPSMPPQPQQFQSPHPSPHM 982
>AY128414-1|AAM75007.1| 311|Drosophila melanogaster GH04057p
protein.
Length = 311
Score = 29.5 bits (63), Expect = 5.7
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = +3
Query: 591 TVGTQNPAESASNHTA---QKINGK*STVVP-TSTSKMGSKAPSCPPQPQKWEVKHRSAH 758
T+ T PA S A + NG VP T+ GS +P+C P+P+ E+ R
Sbjct: 41 TITTTTPASSGGYCAAALCELYNGTHLVHVPHTACGNNGSFSPACGPEPKLLEMSERRRQ 100
Query: 759 LNL 767
L L
Sbjct: 101 LLL 103
>AY061177-1|AAL28725.1| 101|Drosophila melanogaster LD14555p
protein.
Length = 101
Score = 29.5 bits (63), Expect = 5.7
Identities = 22/69 (31%), Positives = 32/69 (46%)
Frame = -3
Query: 247 ICFC*EMKRSRTPRRQERPCYRILATPDREPALKL*KRSLAAPLPLFCAWRSCVRFLLKN 68
+C C K ++T +R E+ C R L T ALK K AP P C + ++ +L+
Sbjct: 26 VCACVGAKWNQTSQRVEQCCQRSLIT-----ALKK-KSPFFAPPPPLCQRKLKIQIVLQK 79
Query: 67 VWDLCNFNS 41
W F S
Sbjct: 80 FWLPWKFKS 88
>AE014298-2029|AAF48366.1| 308|Drosophila melanogaster CG9400-PA
protein.
Length = 308
Score = 29.5 bits (63), Expect = 5.7
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = +3
Query: 591 TVGTQNPAESASNHTA---QKINGK*STVVP-TSTSKMGSKAPSCPPQPQKWEVKHRSAH 758
T+ T PA S A + NG VP T+ GS +P+C P+P+ E+ R
Sbjct: 38 TITTTTPASSGGYCAAALCELYNGTHLVHVPHTACGNNGSFSPACGPEPKLLEMSERRRQ 97
Query: 759 LNL 767
L L
Sbjct: 98 LLL 100
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,543,433
Number of Sequences: 53049
Number of extensions: 836124
Number of successful extensions: 2495
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2476
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3777934368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -