Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14k10
         (475 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-25|CAB55139.2|  528|Caenorhabditis elegans Hypothetical...    29   2.3  
AL117204-15|CAB55129.1|  521|Caenorhabditis elegans Hypothetical...    29   2.3  
Z50027-1|CAA90331.1|  583|Caenorhabditis elegans Hypothetical pr...    28   3.0  
U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical p...    27   6.9  
U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AF002198-7|AAF99935.1|  693|Caenorhabditis elegans Hypothetical ...    27   9.1  

>AL117204-25|CAB55139.2|  528|Caenorhabditis elegans Hypothetical
           protein Y116A8C.38 protein.
          Length = 528

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = +1

Query: 373 YVIRTLSNEVGRYNFVKNFF----VHTSVSIGCDI 465
           Y+IR   N +  + F+ +FF    +H+ ++I CD+
Sbjct: 90  YLIRATDNRIMEFEFILSFFNKKRIHSHLTIKCDV 124


>AL117204-15|CAB55129.1|  521|Caenorhabditis elegans Hypothetical
           protein Y116A8C.24 protein.
          Length = 521

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = +1

Query: 373 YVIRTLSNEVGRYNFVKNFF----VHTSVSIGCDI 465
           Y+IR   N +  + F+ +FF    +H+ ++I CD+
Sbjct: 90  YLIRATDNRIMEFEFILSFFNKKRIHSHLTIKCDV 124


>Z50027-1|CAA90331.1|  583|Caenorhabditis elegans Hypothetical
           protein C39B10.1 protein.
          Length = 583

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -2

Query: 453 DRDRRVHKKILYKIVSTNFVRQRSNHVTFLLPTYKSQIPKLIV 325
           DR+RRV KKI+YK  S   ++ + N       T ++ + ++IV
Sbjct: 436 DRNRRVSKKIVYKQYSDAAIKAKINFKAPEWKTIRTIVVEMIV 478


>U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical
           protein F20D6.12 protein.
          Length = 513

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 94  IPISTLMFTLVNVIESVE*SNGFFKSIFY 8
           IP++   F L+ VI++ + +NGFF   +Y
Sbjct: 340 IPVTIHYFLLIIVIKNAKKANGFFLIFYY 368


>U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical
           protein F28B4.2 protein.
          Length = 860

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
 Frame = +3

Query: 12  NIDLKKPLLHSTDSITLTRVNMS-VDIGISSYP---S*LLLLFDQVFLTGPAVYEVTSGA 179
           +++++KP +HST  ++ +R+N S +  G  S P   S L  LF+    +  +     +G 
Sbjct: 493 SLEIEKPPMHSTPDLSSSRINSSMLSNGSQSTPVKNSTLSRLFNSSRTSEDSGSHNGNGT 552

Query: 180 SHNTDSSHSST 212
            H    S+SS+
Sbjct: 553 WHQHSHSYSSS 563


>AF002198-7|AAF99935.1|  693|Caenorhabditis elegans Hypothetical
           protein F35F10.10 protein.
          Length = 693

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +3

Query: 135 VFLTGPAVYEVTSGASHNTDSSHSS--TRIQLNNAAD 239
           +F+T P V+ V+  A  N +S H S   +   NNA +
Sbjct: 42  LFVTSPIVFGVSGVAEKNKESKHGSLANQTSANNATE 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,132,937
Number of Sequences: 27780
Number of extensions: 219851
Number of successful extensions: 404
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)